[Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

.gitignore

@@ -1,3 +1,5 @@
+.DS_Store
 venv
 .idea
-.DS_Store
+.DS_Store
+*.pyc

.travis.yml

@@ -42,3 +42,4 @@ script:
   - if [ ! "$BUILD_TYPE" == "curation" ]; then travis_wait 70 python run_peevish.py --test_mode --base_path=$BASEPATH --import_filepath=$TRAVIS_BUILD_DIR/src/ http://localhost:7474 neo4j neo4j; fi ;
   - travis_wait 70 python run_peevish.py --base_path=$BASEPATH http://localhost:7474 neo4j neo4j --verbose --import_filepath=$TRAVIS_BUILD_DIR/src/
 
+

anat_McKellar2020_230707.tsv

@@ -0,0 +1,2 @@
+filename	label	is_a	part_of	Template	comment
+McKellar_SEZ_neurons_segmented_mn12D	McKellar_SEZ_mn12D	proboscis muscle 12 dorsal motor neuron|expression pattern fragment	male organism|adult brain|P{R10E04-GAL4.DBD} ∩ P{VT050240-p65.AD} expression pattern	JRC2018Unisex_c	"effector genotype: 'pBPhsFlp2::PEST in attP3;; pJFRC201-10XUAS-FRT > STOP > FRT-myr::smGFP-HA in VK00005, pJFRC240-10XUAS-FRT > STOP > FRT-myr::smGFP-V5-THS-10XUAS-FRT > STOP > FRT-myr::smGFP-FLAG in su(Hw)attP1', note: 'Single neurons from stochastic staining are superimposed upon their mirror images to show bilateral arbors'"

anat_McKellar2020_230707.yaml

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+Imaging_type: confocal microscopy
+DataSet: McKellar2020
+Curator: adm71

id test/anat_SplitSterne2021_221202.tsv

@@ -0,0 +1,2 @@
+vfb_id	filename	label	part_of	Template	comment	is_a
+VFB_alexalex	test_filename	test_label	female organism	JRC2018Unisex_c	This is a test load with a set id. This should not be seen.	expression pattern fragment

id test/anat_SplitSterne2021_221202.yaml

@@ -0,0 +1,3 @@
+Curator: adm71
+DataSet: SplitSterne2021
+Imaging_type: confocal microscopy

records/archive/anat_Aso2014_210920.tsv

@@ -0,0 +1,9 @@
+filename	label	part_of	Template	synonyms	dbxrefs	comment	is_a
+63x-Brain-1845060849232773218	JRC_MB021B_Brain_20121001_31_H2_63x	female organism|adult brain|P{R95A10-GAL4.DBD} ∩ P{R24E06-p65.AD} expression pattern	JRC2018Unisex_c	MB021B|GMR_MB021B|JRC_MB021B	FlyLightSplit:MB021B|jrc_slide_code_api:20121001_31_H2|neuronbridge:MB021B	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'w;3XpJFRC-TLN-smV5 in su(Hw)attP5;5XUAS-IVS-myr::smFLAG in VK00005_pJFRC51-3XUAS-IVS-Syt::smHA in su(Hw)attP1/CyO::TM6b', objective: 'Plan-Apochromat 63x/1.40 Oil DIC M27', mounting protocol: 'DPX Ethanol Mounting', slide_code: '20121001_31_H2', age: 'Day 6-10'	expression pattern fragment
+63x-Brain-1845060849442488418	JRC_MB021B_Brain_20121001_31_H3_63x	female organism|adult brain|P{R95A10-GAL4.DBD} ∩ P{R24E06-p65.AD} expression pattern	JRC2018Unisex_c	MB021B|GMR_MB021B|JRC_MB021B	FlyLightSplit:MB021B|jrc_slide_code_api:20121001_31_H3|neuronbridge:MB021B	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'w;3XpJFRC-TLN-smV5 in su(Hw)attP5;5XUAS-IVS-myr::smFLAG in VK00005_pJFRC51-3XUAS-IVS-Syt::smHA in su(Hw)attP1/CyO::TM6b', objective: 'Plan-Apochromat 63x/1.40 Oil DIC M27', mounting protocol: 'DPX Ethanol Mounting', slide_code: '20121001_31_H3', age: 'Day 6-10'	expression pattern fragment
+63x-Brain-1845060876948734050	JRC_MB109B_Brain_20121019_32_E1_63x	female organism|adult brain|P{R23C12-GAL4.DBD} ∩ P{R76F05-p65.AD} expression pattern	JRC2018Unisex_c	MB109B|GMR_MB109B|JRC_MB109B	FlyLightSplit:MB109B|jrc_slide_code_api:20121019_32_E1|neuronbridge:MB109B	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'w;3XpJFRC-TLN-smV5 in su(Hw)attP5;5XUAS-IVS-myr::smFLAG in VK00005_pJFRC51-3XUAS-IVS-Syt::smHA in su(Hw)attP1/CyO::TM6b', objective: 'Plan-Apochromat 63x/1.40 Oil', mounting protocol: 'DPX Ethanol Mounting', slide_code: '20121019_32_E1', age: 'Day 6-10'	expression pattern fragment
+63x-Brain-1858873135781118050	JRC_MB022B_Brain_20121123_34_D1_63x	female organism|adult brain|P{Tdc2-GAL4.DBD} ∩ P{R24E06-p65.AD} expression pattern	JRC2018Unisex_c	MB022B|GMR_MB022B|JRC_MB022B	FlyLightSplit:MB022B|jrc_slide_code_api:20121123_34_D1|neuronbridge:MB022B	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'w;3XpJFRC-TLN-smV5 in su(Hw)attP5;5XUAS-IVS-myr::smFLAG in VK00005_pJFRC51-3XUAS-IVS-Syt::smHA in su(Hw)attP2/CyO::TM6b', objective: 'Plan-Apochromat 63x/1.40 Oil DIC M27', mounting protocol: 'DPX PBS Mounting', slide_code: '20121123_34_D1', age: 'Day 6-10'	expression pattern fragment
+63x-Brain-1846510860869042274	JRC_MB113C_Brain_20121208_31_C1_63x	female organism|adult brain|P{R95A10-GAL4.DBD} ∩ PBac{Tdc2-p65.AD} expression pattern	JRC2018Unisex_c	MB113C|GMR_MB113C|JRC_MB113C	FlyLightSplit:MB113C|jrc_slide_code_api:20121208_31_C1|neuronbridge:MB113C	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'pJFRC2-10XUAS-IVS-mCD8::GFP in VK00005', objective: 'Plan-Apochromat 63x/1.4 Oil DIC M27', mounting protocol: 'DPX PBS Mounting', slide_code: '20121208_31_C1', age: 'Day 6-10'	expression pattern fragment
+63x-Brain-1846510862081196130	JRC_MB465C_Brain_20121208_31_D4_63x	female organism|adult brain|P{R51B02-GAL4.DBD} ∩ PBac{R37D04-p65.AD} expression pattern	JRC2018Unisex_c	MB465C|GMR_MB465C|JRC_MB465C	FlyLightSplit:MB465C|jrc_slide_code_api:20121208_31_D4|neuronbridge:MB465C	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'pJFRC2-10XUAS-IVS-mCD8::GFP in VK00005', objective: 'Plan-Apochromat 63x/1.4 Oil DIC M27', mounting protocol: 'DPX PBS Mounting', slide_code: '20121208_31_D4', age: 'Day 6-10'	expression pattern fragment
+63x-Brain-2184379395869769826	JRC_LH2449_Brain_20150814_31_B6_63x	female organism|adult brain|P{R65D07-GAL4.DBD} ∩ P{R17A04-p65.AD} expression pattern	JRC2018Unisex_c	MB380B|GMR_MB380B|JRC_MB380B	FlyLightSplit:LH2449|jrc_slide_code_api:20150814_31_B6|neuronbridge:LH2449	tile(s): 'left_dorsal, right_dorsal, ventral (central brain only, the optic lobes are not included in this image)', effector genotype: 'w;;pJFRC225-5XUAS-IVS-myr::smFLAG in VK00005, pJFRC51-3XUAS-IVS-Syt::smHA in su(Hw)attP1', objective: 'Plan-Apochromat 63x/1.40 Oil DIC M27', mounting protocol: 'DPX PBS Mounting', slide_code: '20150814_31_B6', age: 'Day 1-5'	expression pattern fragment
+63x-Brain-2200883870054744138	JRC_LH2449_Brain_20151014_33_D4_63x	female organism|adult brain|P{R65D07-GAL4.DBD} ∩ P{R17A04-p65.AD} expression pattern	JRC2018Unisex_c	MB380B|GMR_MB380B|JRC_MB380B	FlyLightSplit:LH2449|jrc_slide_code_api:20151014_33_D4|neuronbridge:LH2449	tile(s): 'ventral, left_dorsal, right_dorsal (central brain only, the optic lobes are not included in this image)', effector genotype: 'w;;pJFRC225-5XUAS-IVS-myr::smFLAG in VK00005, pJFRC51-3XUAS-IVS-Syt::smHA in su(Hw)attP1', objective: 'Plan-Apochromat 63x/1.40 Oil DIC M27', mounting protocol: 'DPX PBS Mounting', slide_code: '20151014_33_D4', age: 'Day 1-5'	expression pattern fragment

records/archive/anat_Aso2014_210920.yaml

@@ -0,0 +1,3 @@
+Curator: adm71
+DataSet: Aso2014
+Imaging_type: confocal microscopy