Repository for code used for acquisition and analysis of data from wireless miniature microscopes in freely flying bats in the Yartsev Lab at UC Berkeley.
Below is a data sample of the raw (left) and background subtracted ( right) streamed imaging data.
Examples of 3D Place cells:
CNMF-E: https://github.com/zhoupc/CNMF_E
Noremcorre: https://github.com/flatironinstitute/NoRMCorre
FinchScope (Liberti Branch) : https://github.com/gardner-lab/FinchScope/tree/Liberti
CellReg: https://github.com/zivlab/CellReg
A detailed analysis walk-through can be found here.
Learn more about wireless miniature microscopy and other neuro-photonics tools on the FreedomScope page.