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Nextflow based RNA-seq analysis pipeline

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SYSUCC-RNAseqPipe

Documentation Status

Quick start for reproductive analysis

nextflow run RNAseqPipe/main.nf -profile c2 --read "*_{1,2}.fq.gz" --designfile "design.file" --comparefile "compare.txt"

Documentation can be found in RTD

Credits

  • Main author:
  • Contributors:
    • Xiaolong Zhang
    • Kai Yu

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Nextflow based RNA-seq analysis pipeline

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  • Perl 60.6%
  • R 23.3%
  • Nextflow 12.7%
  • Groovy 3.2%
  • Dockerfile 0.2%