SimuSEQ

Install

python setup.py install
# or user install with
# python setup.py install --user

Microarray analysis tool for whole-ecoli project

from simuseq import SimuSEQ  
SimuSEQ().auto([1,1,1,1,0,1],'front','50')

> python main.py
SimuSEQ().readseq()    : on  
SimuSEQ().makeprobe()  : on  
SimuSEQ().microarray() : on  
SimuSEQ().rank()       : on  
SimuSEQ().fasta()      : off  
SimuSEQ().makedata()   : on  
Continue? (y/n) : y

####If you would like to check the status of SimuSEQ, please run main.py .

> python main.py
SimuSEQ().readseq()    : on  
SimuSEQ().makeprobe()  : on  
SimuSEQ().microarray() : on  
SimuSEQ().rank()       : on  
SimuSEQ().fasta()      : off  
SimuSEQ().makedata()   : on  
Continue? (y/n) : n

####You can set probe types and probe length. 'front', 'rear' & 'full'

SimuSEQ().auto([1,1,1,1,0,1],'front','50')
SimuSEQ().auto([1,1,1,1,0,1],'rear','30')
SimuSEQ().auto([1,1,1,1,0,1],'full','full')

####You can change arguments to set the status of SimuSEQ auto mode

1 : on, 0 : off

SimuSEQ( ).auto([1,1,1,1,0,1],'front','50')

1: SimuSEQ( ).readseq( )
1: SimuSEQ( ).makeprobe( )
1: SimuSEQ( ).microarray( )
1: SimuSEQ( ).rank( )
0: SimuSEQ( ).fasta( )
1: SimuSEQ( ).makedata( )