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Update README.md
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On some systems the scripts weren't downloading as executable, added suggestion to fix this if necessary
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jmattock5 authored May 12, 2023
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3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -19,6 +19,7 @@ Download the latest version of the Snakefile, scripts and conda env files.
git clone https://github.com/WatsonLab/KOunt
cd KOunt/
```
Check that the scripts are executable, if not do: `chmod +x scripts/*sh`
### Prepare the reference databases
Download the KOunt UniProt and RNA databases.
```
Expand Down Expand Up @@ -48,7 +49,7 @@ Download the test fastqs. Leave the raw reads location in the config at default
```
wget https://figshare.com/ndownloader/files/39545968
mv 39545968 test_fastqs.tar
tar -xzvf test_fastqs.tar
tar -xvf test_fastqs.tar
rm test_fastqs.tar
snakemake -k --ri --use-conda -n
snakemake -k --ri --use-conda --cores 8
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