WorldCereal classification module v2.1.0

This is the first release of the completely refactored WorldCereal system!

What's Changed

• Stripped version for new design based on OpenEO by @kvantricht in #20
• #17 setup Github actions workflow by @kvantricht in #21
• #17 Setup Github actions by @kvantricht in #22
• Extraction pipelines & data fetching blocks by @GriffinBabe in #36
• Fixed long UDF by @kvantricht in #46
• Using the sample_id for items ID in the stac metadata by @GriffinBabe in #45
• Attempt to fix jenkins build by @kvantricht in #53
• MVP by @kvantricht in #47
• 44 translate cropno crop inference udf to gfmap by @GriffinBabe in #48
• Make batch_size for Presto flexible by @kvantricht in #59
• 56 meteo inference by @GriffinBabe in #60
• Seasons by @kvantricht in #66
• Now writing GeoTiff and having two bands: binary mask and probabilities by @GriffinBabe in #65
• Bugfix seasonality check and max season diff check by @kvantricht in #68
• Centralize worldcereal generate_map method by @kvantricht in #67
• PR 67 fixes by @GriffinBabe in #70
• Make version static for now by @kvantricht in #72
• Add openeo-gfmap dependency by @kvantricht in #74
• 57 udf memory profiling by @kvantricht in #77
• 71 generate map func by @GriffinBabe in #78
• Add croptype inference by @kvantricht in #75
• Define some auth related env vars for Jenkins by @soxofaan in #80
• batch_size as parameter by @jdries in #81
• Point extractions by @VincentVerelst in #84
• Update crop type mapping workflow by @kvantricht in #85
• Refactored fix by @GriffinBabe in #89
• Added configuration data classes for cropland/croptype mapping workflow by @GriffinBabe in #91
• Fix croptype/cropland parameters for pydantic>2 by @GriffinBabe in #94
• Infer classes from model by @kvantricht in #96
• Filter on S1 polarization by @kvantricht in #97
• Updated formatting-checks by @kvantricht in #104
• Formatting checks by @kvantricht in #105
• Custom tile size by @VincentVerelst in #106
• System V1 demo by @kvantricht in #95
• removed dependency on extract attribute for point extractions by @VincentVerelst in #107
• 79 s1 extractions by @GriffinBabe in #113
• Small fix by @GriffinBabe in #114
• Changed spatial resolution to 20m for S1 and small arg fix by @GriffinBabe in #126
• fixed typo in the s1 item_asset definitions in extract_sar.py by @VincentVerelst in #123
• #129 Add custom job_options by @kvantricht in #130
• 121 add slope & Improvement of S1 extractions by @GriffinBabe in #128
• #55 Immediately map to presto band names by @kvantricht in #131
• Renamed altitude->elevation as required by presto by @GriffinBabe in #132
• Compute slope with scipy, avoiding the use of richdem by @kvantricht in #138
• Bugfix dimension order by @kvantricht in #140
• Presto-compilation by @kvantricht in #133
• Add WorldCereal input extractions worfklow by @kvantricht in #137
• extract from first day to last day of month by @kvantricht in #148
• Enable mypy -> this is gonna take some effort by @kvantricht in #147
• Update preprocessing by @GriffinBabe in #149
• Enable pre_test_script.sh for jenkins by @kvantricht in #150
• Fix CI with openEO connections by @kvantricht in #152
• Add openEO tests by @kvantricht in #153
• Use gfmap-based backend connection by @kvantricht in #154
• 139-slope-collection by @kvantricht in #155
• Rebuild stac scripts by @GriffinBabe in #158
• Adding postprocessing to WorldCereal jobs by @kvantricht in #157
• Made the extractor main's loop robust to artifactory errors by @GriffinBabe in #162
• Updated crop calendars by @kvantricht in #173
• allow multiple outputs for inference results by @jdegerickx in #175
• Postproc by @jdegerickx in #177
• Refactoring of System V1 demo by @kvantricht in #170
• Allow custom job_options for collect_inputs by @kvantricht in #178
• Unified CropClassifier and no more binary postprocessing by @kvantricht in #180
• Fix crop/no-crop lookup table by @kvantricht in #181
• Speedup extractions from public Parquet by @cbutsko in #183
• Fix filenaming by @jdegerickx in #185
• Specify which product is being generated by @kvantricht in #186
• Bugfix: do not assume a label order during postprocessing by @kvantricht in #187
• get rid of conf_threshold parameter as it may introduce "undecided" p… by @jdegerickx in #188
• Make the use of class weights optional (default=False) by @kvantricht in #189
• Updated cropland model v006 by @kvantricht in #192
• Updated README for release by @kvantricht in #193
• Updated crop calendars by @kvantricht in #196
• cleaned notebooks for demo by @jdegerickx in #190
• f!x call to postprocessparameters by @jdegerickx in #197
• Fix UI map by @jdegerickx in #198
• 194-align-training-window-with-user-defined-temporal-extent by @cbutsko in #195
• 179-add-hierarchical-croptype-picker by @cbutsko in #191
• Override parent method to suppress warning by @kvantricht in #199
• Add masking to custom model training by @kvantricht in #200
• Add basic visualization by @jdegerickx in #201
• replaced warning with error and helper message by @cbutsko in #205
• Update notebooks by @jdegerickx in #203
• added figures on data availability by @jdegerickx in #206
• Bump to 2.1.0 by @kvantricht in #202

New Contributors

• @kvantricht made their first contribution in #20
• @GriffinBabe made their first contribution in #36
• @soxofaan made their first contribution in #80
• @jdries made their first contribution in #81
• @VincentVerelst made their first contribution in #84
• @jdegerickx made their first contribution in #175
• @cbutsko made their first contribution in #183

Full Changelog: v1.1.1...v2.1.0

Uploaded to Zenodo.