Data processing pipeline (DPP) for bulk RNA seq

This is a typical data processing pipeline for bulk RNA seq data

Updated date: 2022.02.18

Author and License

Author: Xiao Dong

Email: dong0265@umn.edu (X.D.)

Licensed under the GNU Affero General Public License version 3 or later.

Software tools

fastqc (QC of fastq files)

fastq_screen (QC of fastq files)

STAR (aligner)

Picard tools (Clean up alignment files)

RSEM (expression quantification)