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@Xinglab

Xinglab

Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia and University of Pennsylvania

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  1. rmats-turbo rmats-turbo Public

    C++ 228 55

  2. rmats2sashimiplot rmats2sashimiplot Public

    Python 135 54

  3. DARTS DARTS Public

    Deep-learning Augmented RNA-seq analysis of Transcript Splicing

    Python 110 32

  4. espresso espresso Public

    Python 58 4

  5. lr2rmats lr2rmats Public

    Long read to rMATS

    C 31 6

  6. CLAM CLAM Public

    CLIP-seq Analysis of Multi-mapped reads

    Python 28 6

Repositories

Showing 10 of 33 repositories
  • ProteoSeq Public

    ProteoSeq: A proteogenomics workflow leveraging long-read RNA-seq data for discovery of isoform-level peptides and proteins.

    Xinglab/ProteoSeq’s past year of commit activity
    Python 0 0 0 0 Updated Nov 18, 2024
  • rmats-turbo Public
    Xinglab/rmats-turbo’s past year of commit activity
    C++ 228 55 182 1 Updated Oct 3, 2024
  • rMATS-long Public
    Xinglab/rMATS-long’s past year of commit activity
    Python 23 2 3 0 Updated Aug 22, 2024
  • rmats2sashimiplot Public
    Xinglab/rmats2sashimiplot’s past year of commit activity
    Python 135 GPL-2.0 54 29 0 Updated Aug 20, 2024
  • IRIS Public

    IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

    Xinglab/IRIS’s past year of commit activity
    Python 24 9 10 0 Updated Aug 20, 2024
  • espresso Public
    Xinglab/espresso’s past year of commit activity
    Python 58 4 10 0 Updated Aug 5, 2024
  • TideHunter Public

    TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

    Xinglab/TideHunter’s past year of commit activity
    C 19 MIT 2 8 0 Updated Jun 17, 2024
  • DARTS Public

    Deep-learning Augmented RNA-seq analysis of Transcript Splicing

    Xinglab/DARTS’s past year of commit activity
    Python 110 32 17 0 Updated Feb 7, 2024
  • isoCirc Public

    isoCirc

    Xinglab/isoCirc’s past year of commit activity
    Python 10 GPL-3.0 4 5 0 Updated Nov 27, 2023
  • TEQUILA-seq Public

    The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

    Xinglab/TEQUILA-seq’s past year of commit activity
    Python 8 0 1 0 Updated Sep 5, 2023
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