Skip to content

Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment.

Notifications You must be signed in to change notification settings

Yelab2020/SpatialTME

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

25 Commits
 
 
 
 
 
 

Repository files navigation

SpatialTME

Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed to characterize tumor spatial microenvironment. SpatialTME collected 296 slides with spatial transcriptomics based on 10X Genomics Visium or Slide-seq covering 19 cancer types and provides convenient tools to help users explore spatial TME, including six modules: spatial structure, spatial gene expression, spatial differential expression, spatial cell pattern, gene expression profile at sub-spot level, and cell interaction analysis.

website link: http://www.spatialtme.yelab.site/

Snipaste_2023-12-04_15-05-57

About

Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published