Update logs:
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MetaPhlAn4’s new species annotations are converted to GTDB and diversity calculation scripts
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Integrate Prof. Chen Tong’s corrections using Pipeline
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CoverM quantifies the relative abundance of MAGs, merges and averages the results, and adds them to the tree annotation results.
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The conda package of drep is 3.4.2, which lacks checkm (267M) and is replaced by the old version 2.6.2 (526M).
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The dbCAN3 database is updated to the 2023 version, and the new diamond version builds indexes faster
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Kneaddata quality control is skipped, fastp quality control is a required step.
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Upgrade mutliqc from 1.14 to 1.15
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Added Chapter 5: Single bacterial genome analysis process
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Updated the Kraken2 database to version 20231009, adding alpha, beta diversity, Krona web page, and Pavian Sankey diagram
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Added optional checkm2 evaluation
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MetaPhlAn4新增物种注释转换为GTDB、多样性计算脚本
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整合陈同老师用Pipeline的修正
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CoverM定量MAGs相对丰度、结果合并和求均值，并添加到进入树注释结果中
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drep的conda包为3.4.2缺少checkm(267M)，替换为旧版2.6.2(526M)
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dbCAN3数据库更新为2023版，diamond新版建索引更快
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Kneaddata质控跳过，fastp质控为必选步骤
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mutliqc升级1.14为1.15
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增加第五章：单菌基因组分析流程
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更新Kraken2数据库为20231009版本，新增alpha, beta多样性、Krona网页、Pavian桑基图
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新增可选的checkm2评估