ShapeOut 2.18.1

This release should bring back support for interfacing with R to perform (G)LMM analyses. Make sure you have R installed and the executable set in the preferences. You might have to add R to your operating system's PATH variable.

• setup: bump dclab to 0.61.3 (replace rpy2 with wrapper) (#73 #161)

ShapeOut 2.18.0

The 2.18 release introduces a breaking change that is relevant for you if you are using the built-in Young's modulus computation (see below). In addition, I fixed a few minor bugs that partially affect performance when accessing remote datasets.

• BREAKING CHANGE: set default viscosity model for Young's modulus
  computation to "buyukurganci-2022", because it is more accurate
  and also because it is defined for the "0.83% MC-PBS" medium
• BREAKING CHANGE: remove support for machine learning extensions
  (.modc files), because they are not used
• fix: remove leading/trailing slashes for DCOR servers
• setup: bump dclab to 0.61.1 (fix basin-based array access, export from
  datasets with internal basins, other minor fixes)

ShapeOut 2.17.0

With dclab 0.60.0, Shape-Out now supports internal basin features and writes logs to exported data. Make sure to update Shape-Out if you intend to work with the next releases of dcnum or ChipStream.

ShapeOut 2.16.5

Install this release if you are working with basin features (e.g. DCOR data). I made several fixes in dclab 0.59.1 which were related to cyclic basin definitions and data export from basin-based datasets.

ShapeOut 2.16.4

This releases improves basin-compatibility with the dclab 0.59.0 upgrade which I highly recommend. This update is mandatory if you are working with ChipStream 0.4.0 or above.

ShapeOut 2.16.3

This release fixes a few minor bugs and improves usability. With dclab version 0.58.7, you can also expect minor performance improvements in some edge cases.

The builds for macOS and Windows that you can download from this page now have the statistical significance testing capabilities stripped from them. If you would like to use those, you would have to install Shape-Out via Python/pip. For progress on this issue, please watch #161.

• fix: data export feature selection must default to features_loaded
• enh: only show local features in QuickView Event Feature tab
• enh: show dcnum pipeline identifiers in Analysis view
• enh: add section:key tool tips for analysis view metadata
• enh: added links to docs explaining default export selection
• docs: remove Shape-Out 1 reference
• setup: remove rpy2 from dependencies until #161 is fixed
• setup: migrate from setup.py to pyproject.toml
• setup: bump dclab to 0.58.7 (performance)

ShapeOut 2.16.1

This is a maintenance release with an update of dclab to 0.58.4 which includes:

• reduced memory usage when computing contour-based features such as volume
• export dataset configuration as metadata in .tsv export
• support relative basin paths that were created for both posix- or nt-based systems, independent of the current OS

ShapeOut 2.16.0

The major achievement in this release is the support for mapped basin features. You can read up on basin features in the documentation of dclab (https://dclab.readthedocs.io/en/stable/sec_av_basins/index.html) and Shape-Out (https://shapeout2.readthedocs.io/en/stable/sec_qg_batch_stats.html). In addition, the QuickView panel now highlights the origin of features as described in the documentation (https://shapeout2.readthedocs.io/en/stable/sec_interface.html#quick-view).

• feat: enable storage strategy (basin control) in export dialog (#159)
• fix: ask for .tsv output path before computing statistics
• enh: color feature data in QuickView combobox according to availability
• enh: hide basinmap features in scatter plot selections (#159)
• docs: remove reference to Shape-Out 1 in introduction
• docs: mention basins and link to dclab (#159)
• docs: add quick guide for data export
• ref: reduce usage of dclab.dfn.scalar_feature_names (#108)
• setup: bump dclab to 0.58.2

ShapeOut 2.15.5

This is a bugfix release that brings back the right-click menu in the QuickView plots.

• fix: right-click menu not working for plot widgets (#160)
• ref: introduce FeatureComboBox class for listing features

ShapeOut 2.15.4

This is a bug-fix release. Shape-Out will now not override any pre-existing files in the export output directory. (If you are working with two instances of Shape-Out, please still try to not export to the same directory from both). In some cases, Shape-Out could not open input files that were recorded with zero flow. For more details see the changelog below.

• fix: very small numbers not parsed when showing metadata (#158)
• fix: do not allow question mark "?" in exported file names (#156)
• fix: do not override files when exporting data (#153)
• fix: remove the "so2exp" prefix when exporting data (#157)