HWE accounting for population structure
- HWE test accounting for population structure via
--inbreed 1
- new option
--USV
as the prefix of pcaone.eigvecs/.eigvals/.loadigns/.mbim
files - the output
.eigvecs2
stores the eigenvectors of the covariance matrix, which also works for BEALGE file with genotype likelihood input, while the.eigvecs,.eigvals,.loadings
stores the U,S,V matrix for reconstructing the PI matrix
see Full change log