Skip to content
View a-slide's full-sized avatar
92 followers · 28 following

Achievements

Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Organizations

@nanoporetech @birneylab

Block or report a-slide

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
a-slide/README.md

Hi there 👋

I am Adrien

I am a Senior research scientist working in the research division at Oxford Nanopore

I ❤️ Python, linux and dataviz

Twitter Follow GitHub followers Offset Earth (Carbon Offset) Offset Earth (Trees)

Adrien's github stats

Projects

pycoQC pycoMeth pycoSnake
NanoCount Nanocompore

Pinned Loading

  1. Sekator Sekator Public archive

    Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)

    Python 3 2

  2. pycoSnake pycoSnake Public archive

    pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing data

    Python 8 1

  3. pycoMeth pycoMeth Public archive

    DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets

    Python 34 2

  4. versipy versipy Public

    Versatile version and medatada managment across the python packaging ecosystem with git integration

    Python 1 1

  5. pycoQC pycoQC Public archive

    pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

    Python 273 41

  6. NanoCount NanoCount Public

    EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2

    Python 57 5