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Add binary seq
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aTrotier committed Jun 22, 2020
1 parent 098237a commit 6c17fbc
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3 changes: 3 additions & 0 deletions .gitignore
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SEQ/.DS_Store
methods/.DS_Store
23 changes: 4 additions & 19 deletions README.md
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Expand Up @@ -15,11 +15,10 @@ If you want the source code, send a request to : <aurelien.trotier@rmsb.u-bordea
* [Acquisition](#Acquisition)
* [Reconstruction](#Reconstruction)
* [Simulation](#Simulation)
* [NNotes](#Sequence installation)

## Folder structure

* **a_MP2RAGE_CS** : Includes the file to install the sequence on Bruker scanner (PV6.0.1).
* **SEQ** : Binary the sequence on Bruker scanner (PV6.0.1).
* **reco-a_MP2RAGE_cs** : Matlab script for reconstruction
* **script_T1MAP_MP2RAGE.m** is the main script to reconstruct the T1 maps
* **simu folder** : regroup script to find optimal parameters for acquisition and reconstruction
Expand All @@ -33,22 +32,10 @@ Sequence has been developped for Paravision **PV6.0.1**. Minor modification are

**Installation step :**

* Copy the folder **a_MP2RAGE_CS** to the location (Change the {USER} by your user name) :
`/opt/PV6.0.1/prog/curdir/{USER}/Paravision/methods/src/`

* In the Paravision Workspace Explorer go to : `Method Development/User Methods ({USER})`

* right-click on the sequence a_MP2RAGE_CS
* Build/install
* Let all the build options selected -> OK
* You should see these last lines in popup window **output** :

```
Link a_MP2RAGE_CS.so
Install /opt/PV6.0.1/prog/curdir/{USER}/Paravision/methods/a_MP2RAGE_CS.so
Install /opt/PV6.0.1/prog/curdir/{USER}/Paravision/methods/a_MP2RAGE_CS.xml
```
* Copy the binary sequence under the folder
`/opt/PV6.0.1/share/`

* To install : `File -> Import -> Binary Method ` and select the sequence in the share folder.


Sequence is now install and available under the **Palette** tab/Explorer tab/Scan Programs & Protocols :
Expand All @@ -59,8 +46,6 @@ Region : AnyRegion
Application : UserMethods
```



To use it drag and drop to an exam card.

## Acquisition
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