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Push to Dockerhub before running test pipeline #6

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merged 1 commit into from
Jun 12, 2024
Merged

Push to Dockerhub before running test pipeline #6

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10 changes: 5 additions & 5 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -40,10 +40,6 @@ jobs:
chmod +x nextflow
sudo mv nextflow /usr/local/bin/

- name: Run pipeline with test data
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results

- name: Login to Docker Hub
uses: docker/login-action@v1
with:
Expand All @@ -53,4 +49,8 @@ jobs:
- name: Build and publish to docker
run: |
docker build --platform linux/amd64 -t adamd3/bactseq:latest .
docker push adamd3/bactseq:latest
docker push adamd3/bactseq:latest

- name: Run pipeline with test data
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results
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