bioRad 0.8.1 #632
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, develop] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| # - {os: ubuntu-latest, r: 'devel'} # disabled, runtime > 45 min. | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install macOS system dependencies | |
| if: runner.os == 'macOS' | |
| run: | | |
| env HOMEBREW_NO_AUTO_UPDATE=1 brew install hdf5 proj gsl | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install Linux system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| pak::local_system_requirements(execute = TRUE) | |
| pak::pkg_system_requirements("rcmdcheck", execute = TRUE) | |
| pak::pkg_system_requirements("proj4", execute = TRUE) # Using same proj for now... | |
| pak::pkg_system_requirements("hdf5r", execute = TRUE) # Using same hdf5 for now... | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| # set upgrade to FALSE because otherwise several package that are not strict dependencies | |
| # (like terra) get triggered to build and fail | |
| pak::local_install_deps(upgrade = FALSE) | |
| pak::pkg_install("rcmdcheck") | |
| pak::pkg_install("rmarkdown") | |
| pak::pkg_install("markdown") | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true |