This repository contains code for our manuscript about missing data in ecological time series A separate gitHub repository that serves as version control for the Overleaf version of this manuscript can be found here: https://github.com/aestears/MissingDataManuscript/tree/main
data/ This folder contains the real population size and GPP datasets used in this analysis, the simulated datsets, the datasets with missingness introduced, and model results.
figures/ This folder contains the figures included in the manuscript and supplementary material, as well as the code used to generate them.
Functions/ This folder contains functions that are used to simulate data and fit statistical models in this analysis.
GPP sim and real/ This folder contains code used to generate models that are used in the analysis of GPP data.
Population sim and real/ This folder contains code used to generate models that are used in the analysis of population data.
Model_Runs/ This folder contains code to run models with different missing data approaches on real and simulated GPP and population time series.
ModelChecking/ This folder contains code to explore and validate model approaches used in our analysis
Simulations/ This folder contains code to simulate GPP and population datasets, and to generate datasets with artificially introduced missingess.