Updates to roll-back later

afonsoguerra · May 13, 2022 · 671bd25 · 671bd25
1 parent 44de1d2
commit 671bd25
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diff --git a/.gitignore b/.gitignore
@@ -3,3 +3,4 @@
 *.swp
 venv/
 *.egg-info
+snpeffwrapper.simg
diff --git a/scripts/snpEffBuildAndRun b/scripts/snpEffBuildAndRun
@@ -5,7 +5,11 @@ import logging
 #import shutil
 import sys
 
-sys.path.append('/sanger-pathogens/SnpEffWrapper/')
+#Early morning hacks...
+#sys.path.append('/sanger-pathogens/SnpEffWrapper/')
+sys.path.append('/usr/local/lib/python3.10/site-packages/')
+sys.path.append('/usr/local/lib/python3.10/site-packages/vcf/')
+
 from snpEffWrapper.wrapper import annotate_vcf, check_and_amend_executables
 
 def parse_arguments():