use norpac species for lookup

otherwise it's looking for a global species, possibly "FSOL", and the table pulled from the norpac schema will have NA rows and R will bomb out.
afsc-assessments · Dec 20, 2023 · 6cc978f · 6cc978f
1 parent b54bc03
commit 6cc978f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/bsai_flats.R b/R/bsai_flats.R
@@ -90,8 +90,8 @@ bsai_fhs<- function(year, off_yr = FALSE){
   if(isTRUE(off_yr)) {
     disconnect(akfin) 
   } else {
-    q_fsh_specimen(year, species, area, db=akfin, print_sql=FALSE, save=TRUE)
-    q_fsh_length(year, species, area, db=akfin, print_sql=FALSE, save=TRUE)  
+    q_fsh_specimen(year, species=norpac_species, area, db=akfin, print_sql=FALSE, save=TRUE)
+    q_fsh_length(year, species=norpac_species, area, db=akfin, print_sql=FALSE, save=TRUE)  
     disconnect(akfin)  
 
     afsc = connect("afsc")