v0.9.1-devel

What's new on version 0.9.1-devel

• Change make_query_table to a broader approach, mapping missing data (note that orthology scores from joined fragments are still as NaNs).

v0.9.0-devel

What's new on version 0.9.0-devel

• Adds --outdir to control where postoga output goes.
• Adds --isoforms to allow the user specify external isoform tables.
• Disables git features from logger.py [branch/commit] info.
• Changes a small portion of filter_query_annotation.py && make_query_table.py to fix the --paralog flag and allow a broader inclusion of isoforms.

v0.8.0-devel

Adds --paralog, a new argument to preserve transcripts with paralog projections probabilities less or equal to a given threshold.
Implements --skip to only use postoga as a filtering tool, skipping additional post-processing steps.
Adds bed as an option to --to to avoid the conversion to gtf/gff.
Modifies logger.py to send logging information to stdout (this is also written to postoga.log)