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variant_calling_pipeline 1.2

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@alipirani88 alipirani88 released this 05 Jun 15:11
· 314 commits to master since this release
1.2
15231ba
  • Generating consensus of all the unique variant positions with "-" and "N" that can be used for Gubbins and Beast analysis
  • Integrating Gubbins
  • Fixed SNP/INDEL matrix bugs, replacing bcftools merge with GATK combine variants
  • Fixed Phaster logs and checks
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