connectome_examples

This repository contains example notebooks for connectome analysis. Relies on connectome_tools.

Conda environment (Python users)

This repository includes a convenience environment file for conda users. To create a conda environment with the dependencies for these examples, run:

conda env create -f env.yml

To activate the enironment run:

conda activate connectome

Then you will need to install connectome_tools following the instructions there.

Python users without conda

You will need to install the packages needed for the notebooks using your preferred method. Please make sure to have pandas>=2.0.0 or some code will fail silently. You will also need to install connectome_tools following the instructions there.