Update fastapi requirement from ==0.110.* to ==0.111.* in /api #45

Workflow file for this run

.github/workflows/main-build-and-deploy.yml at 440ea79

	name: Main branch Build and Deployment
	on:
	pull_request:
	types: [closed]
	branches:
	- main
	jobs:
	on-merge-and-deploy:
	name: Skip on unmerged or 'no-deploy' PRs
	if: github.event.pull_request.merged == true && !contains(github.event.pull_request.labels.*.name, 'no-deploy')
	runs-on: ubuntu-22.04
	steps:
	- name: Confirm execution
	shell: bash
	run: \|
	echo "PR merge detected and deployment wanted."
	pipeline-deploy-aws-infra:
	name: Deploy/update AWS infrastructure for pipeline
	needs: [on-merge-and-deploy]
	permissions:
	id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions
	runs-on: ubuntu-22.04
	defaults:
	run:
	working-directory: pipeline/aws_infra
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	- name: Setup node.js (CDK requirement)
	uses: actions/setup-node@v4
	with:
	node-version: "18"
	- name: Install CDK
	run: npm install -g aws-cdk
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Install CDK stack dependencies
	run: pip install -r requirements.txt
	- name: AWS credentials configuration
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
	role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-cdk-deploy
	aws-region: us-east-1
	- name: CDK validations (resource assertions and cdk diff)
	run: make validate
	- name: cdk deploy
	run: make deploy ADD_CDK_ARGS="--require-approval never"
	api-deploy-image-repo:
	name: Deploy/update container image repository stack for API
	needs: [on-merge-and-deploy]
	permissions:
	id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions
	runs-on: ubuntu-22.04
	defaults:
	run:
	working-directory: api/aws_infra
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	- name: Setup node.js (CDK requirement)
	uses: actions/setup-node@v4
	with:
	node-version: "18"
	- name: Install CDK
	run: npm install -g aws-cdk
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Install CDK stack dependencies
	run: pip install -r requirements.txt
	- name: AWS credentials configuration
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
	role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-cdk-deploy
	aws-region: us-east-1
	- name: CDK validations (resource assertions and cdk diff)
	run: make validate-image-stack
	- name: cdk deploy
	run: cdk deploy PaviApiImageRepoCdkStack --require-approval never
	pipeline-seq-retrieval-build-and-push-docker-image:
	needs: [on-merge-and-deploy, pipeline-deploy-aws-infra]
	permissions:
	id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions
	runs-on: ubuntu-22.04
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	sparse-checkout: \|
	pipeline/seq_retrieval/
	- name: Store release tag in env
	shell: bash
	run: \|
	echo "tagname=$(git describe --tags)" >> $GITHUB_ENV
	# This step will configure environment variables to be used by all steps
	# involving AWS interaction further down
	- name: AWS credentials configuration
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
	role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-build-image-pipeline-seq-retrieval
	aws-region: us-east-1
	- name: Amazon ECR login
	id: login-ecr
	uses: aws-actions/amazon-ecr-login@v2
	- name: Build and push container image
	uses: docker/build-push-action@v5
	with:
	context: ./pipeline/seq_retrieval/
	push: true
	tags: \|
	${{ steps.login-ecr.outputs.registry }}/agr_pavi/pipeline_seq_retrieval:${{ env.tagname }}
	${{ steps.login-ecr.outputs.registry }}/agr_pavi/pipeline_seq_retrieval:${{ github.event.pull_request.base.ref }}
	platforms: linux/amd64
	pipeline-alignment-build-and-push-docker-image:
	needs: [on-merge-and-deploy, pipeline-deploy-aws-infra]
	permissions:
	id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions
	runs-on: ubuntu-22.04
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	sparse-checkout: \|
	pipeline/alignment/
	- name: Store release tag in env
	shell: bash
	run: \|
	echo "tagname=$(git describe --tags)" >> $GITHUB_ENV
	# This step will configure environment variables to be used by all steps
	# involving AWS interaction further down
	- name: AWS credentials configuration
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
	role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-build-image-pipeline-seq-retrieval
	aws-region: us-east-1
	- name: Amazon ECR login
	id: login-ecr
	uses: aws-actions/amazon-ecr-login@v2
	- name: Build and push container image
	uses: docker/build-push-action@v5
	with:
	context: ./pipeline/alignment/
	push: true
	tags: \|
	${{ steps.login-ecr.outputs.registry }}/agr_pavi/pipeline_alignment:${{ env.tagname }}
	${{ steps.login-ecr.outputs.registry }}/agr_pavi/pipeline_alignment:${{ github.event.pull_request.base.ref }}
	platforms: linux/amd64
	api-build-and-push-docker-image:
	needs: [on-merge-and-deploy, api-deploy-image-repo]
	permissions:
	id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions
	runs-on: ubuntu-22.04
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Store release tag in env
	shell: bash
	run: \|
	echo "tagname=$(git describe --tags)" >> $GITHUB_ENV
	# This step will configure environment variables to be used by all steps
	# involving AWS interaction further down
	- name: AWS credentials configuration
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
	role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-build-image-pipeline-seq-retrieval
	aws-region: us-east-1
	- name: Amazon ECR login
	id: login-ecr
	uses: aws-actions/amazon-ecr-login@v2
	- name: Build and push container image
	uses: docker/build-push-action@v5
	with:
	context: ./
	file: api/Dockerfile
	push: true
	tags: \|
	${{ steps.login-ecr.outputs.registry }}/agr_pavi/api:${{ env.tagname }}
	${{ steps.login-ecr.outputs.registry }}/agr_pavi/api:${{ github.event.pull_request.base.ref }}
	platforms: linux/amd64
	api-deploy-application:
	name: Deploy application (version) for API
	needs:
	- on-merge-and-deploy
	- api-build-and-push-docker-image
	- pipeline-alignment-build-and-push-docker-image
	- pipeline-seq-retrieval-build-and-push-docker-image
	permissions:
	id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions
	runs-on: ubuntu-22.04
	defaults:
	run:
	working-directory: api/aws_infra
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Store release tag in env
	shell: bash
	run: \|
	echo "tagname=$(git describe --tags)" >> $GITHUB_ENV
	- name: Setup node.js (CDK requirement)
	uses: actions/setup-node@v4
	with:
	node-version: "18"
	- name: Install CDK
	run: npm install -g aws-cdk
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Install CDK stack dependencies
	run: pip install -r requirements.txt
	- name: AWS credentials configuration
	uses: aws-actions/configure-aws-credentials@v4
	with:
	role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
	role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-api-cdk-deploy
	aws-region: us-east-1
	- name: CDK validations (resource assertions and cdk diff)
	run: make validate-application-stack validate-environment-stack
	- name: Deploy application (and version)
	run: make deploy-application PAVI_DEPLOY_VERSION_LABEL="${{ env.tagname }}" ADD_CDK_ARGS="--require-approval never"
	- name: Deploy to main environment
	run: make deploy-environment PAVI_DEPLOY_VERSION_LABEL="${{ env.tagname }}" PAVI_IMAGE_TAG="${{ env.tagname }}" \
	DEPLOY_ENVIRONMENT=PaviApiEbMainStack ADD_CDK_ARGS="--require-approval never"

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Update fastapi requirement from ==0.110.* to ==0.111.* in /api #45

Workflow file

Update fastapi requirement from ==0.110.* to ==0.111.* in /api #45

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Workflow file for this run