feat: atlas_search_extractor | 🎉 Initial commit. (#415)

Signed-off-by: mgorsk1 <gorskimariusz13@gmail.com>

databuilder/extractor/atlas_search_data_extractor.py

@@ -0,0 +1,311 @@
+# Copyright Contributors to the Amundsen project.
+# SPDX-License-Identifier: Apache-2.0
+
+import importlib
+import logging
+import multiprocessing.pool
+from copy import deepcopy
+from functools import reduce
+from typing import (
+    Any, Dict, Generator, Iterator, List, Optional, Tuple,
+)
+
+from atlasclient.client import Atlas
+from pyhocon import ConfigFactory, ConfigTree
+
+from databuilder.extractor.base_extractor import Extractor
+
+LOGGER = logging.getLogger(__name__)
+
+# custom types
+type_fields_mapping_spec = Dict[str, List[Tuple[str, str, Any, Any]]]
+type_fields_mapping = List[Tuple[str, str, Any, Any]]
+
+# @todo document classes/methods
+# @todo write tests
+
+__all__ = ['AtlasSearchDataExtractor']
+
+
+class AtlasSearchDataExtractorHelpers:
+    @staticmethod
+    def _filter_none(input_list: List) -> List:
+        return list(filter(None, input_list))
+
+    @staticmethod
+    def get_column_names(column_list: List) -> List:
+        return AtlasSearchDataExtractorHelpers._filter_none(
+            [c.get('attributes').get('name') for c in column_list if c.get('status').lower() == 'active'])
+
+    @staticmethod
+    def get_column_descriptions(column_list: List) -> List:
+        return AtlasSearchDataExtractorHelpers._filter_none(
+            [c.get('attributes').get('description') for c in column_list if c.get('status').lower() == 'active'])
+
+    @staticmethod
+    def get_badges_from_classifications(classifications: List) -> List:
+        return AtlasSearchDataExtractorHelpers._filter_none(
+            [c.get('typeName') for c in classifications if c.get('entityStatus', '').lower() == 'active'])
+
+
+class AtlasSearchDataExtractor(Extractor):
+    ATLAS_URL_CONFIG_KEY = 'atlas_url'
+    ATLAS_PORT_CONFIG_KEY = 'atlas_port'
+    ATLAS_PROTOCOL_CONFIG_KEY = 'atlas_protocol'
+    ATLAS_VALIDATE_SSL_CONFIG_KEY = 'atlas_validate_ssl'
+    ATLAS_USERNAME_CONFIG_KEY = 'atlas_auth_user'
+    ATLAS_PASSWORD_CONFIG_KEY = 'atlas_auth_pw'
+    ATLAS_SEARCH_CHUNK_SIZE_KEY = 'atlas_search_chunk_size'
+    ATLAS_DETAILS_CHUNK_SIZE_KEY = 'atlas_details_chunk_size'
+    ATLAS_TIMEOUT_SECONDS_KEY = 'atlas_timeout_seconds'
+    ATLAS_MAX_RETRIES_KEY = 'atlas_max_retries'
+
+    PROCESS_POOL_SIZE_KEY = 'process_pool_size'
+
+    ENTITY_TYPE_KEY = 'entity_type'
+
+    DEFAULT_CONFIG = ConfigFactory.from_dict({ATLAS_URL_CONFIG_KEY: "localhost",
+                                              ATLAS_PORT_CONFIG_KEY: 21000,
+                                              ATLAS_PROTOCOL_CONFIG_KEY: 'http',
+                                              ATLAS_VALIDATE_SSL_CONFIG_KEY: False,
+                                              ATLAS_SEARCH_CHUNK_SIZE_KEY: 250,
+                                              ATLAS_DETAILS_CHUNK_SIZE_KEY: 25,
+                                              ATLAS_TIMEOUT_SECONDS_KEY: 120,
+                                              ATLAS_MAX_RETRIES_KEY: 2,
+                                              PROCESS_POOL_SIZE_KEY: 10})
+
+    # @todo fill out below fields for TableESDocument
+    # tags: List[str],
+
+    # es_document field, atlas field path, modification function, default_value
+    FIELDS_MAPPING_SPEC: type_fields_mapping_spec = {
+        'Table': [
+            ('database', 'typeName', None, None),
+            ('cluster', 'attributes.qualifiedName', lambda x: x.split('@')[-1], None),
+            ('schema', 'relationshipAttributes.db.displayText', None, None),
+            ('name', 'attributes.name', None, None),
+            ('key', 'attributes.qualifiedName', None, None),
+            ('description', 'attributes.description', None, None),
+            ('last_updated_timestamp', 'updateTime', lambda x: int(x) / 1000, 0),
+            ('total_usage', 'attributes.popularityScore', lambda x: int(x), 0),
+            ('unique_usage', 'attributes.uniqueUsage', lambda x: int(x), 1),
+            ('column_names', 'relationshipAttributes.columns',
+             lambda x: AtlasSearchDataExtractorHelpers.get_column_names(x), []),
+            ('column_descriptions', 'relationshipAttributes.columns',
+             lambda x: AtlasSearchDataExtractorHelpers.get_column_descriptions(x), []),
+            ('tags', 'tags', None, []),
+            ('badges', 'classifications',
+             lambda x: AtlasSearchDataExtractorHelpers.get_badges_from_classifications(x), []),
+            ('display_name', 'attributes.qualifiedName', lambda x: x.split('@')[0], None),
+            ('schema_description', 'attributes.parameters.sourceDescription', None, None),
+            ('programmatic_descriptions', 'attributes.parameters', lambda x: [str(s) for s in list(x.values())], {})
+        ]
+    }
+
+    ENTITY_MODEL_BY_TYPE = {
+        'Table': 'databuilder.models.table_elasticsearch_document.TableESDocument'
+    }
+
+    REQUIRED_RELATIONSHIPS_BY_TYPE = {
+        'Table': ['columns']
+    }
+
+    def init(self, conf: ConfigTree) -> None:
+        self.conf = conf.with_fallback(AtlasSearchDataExtractor.DEFAULT_CONFIG)
+        self.driver = self._get_driver()
+
+        self._extract_iter: Optional[Iterator[Any]] = None
+
+    @property
+    def entity_type(self) -> str:
+        return self.conf.get(AtlasSearchDataExtractor.ENTITY_TYPE_KEY)
+
+    @property
+    def basic_search_query(self) -> Dict:
+        query = {
+            'typeName': self.entity_type,
+            'excludeDeletedEntities': True,
+            'query': '*'
+        }
+
+        LOGGER.debug(f'Basic Search Query: {query}')
+
+        return query
+
+    @property
+    def dsl_search_query(self) -> Dict:
+        query = {
+            'query': f'{self.entity_type} where __state = "ACTIVE"'
+        }
+
+        LOGGER.debug(f'DSL Search Query: {query}')
+
+        return query
+
+    @property
+    def model_class(self) -> Any:
+        model_class = AtlasSearchDataExtractor.ENTITY_MODEL_BY_TYPE.get(self.entity_type)
+
+        if model_class:
+            module_name, class_name = model_class.rsplit(".", 1)
+            mod = importlib.import_module(module_name)
+
+            return getattr(mod, class_name)
+
+    @property
+    def field_mappings(self) -> type_fields_mapping:
+        return AtlasSearchDataExtractor.FIELDS_MAPPING_SPEC.get(self.entity_type) or []
+
+    @property
+    def search_chunk_size(self) -> int:
+        return self.conf.get_int(AtlasSearchDataExtractor.ATLAS_SEARCH_CHUNK_SIZE_KEY)
+
+    @property
+    def relationships(self) -> Optional[List[str]]:
+        return AtlasSearchDataExtractor.REQUIRED_RELATIONSHIPS_BY_TYPE.get(self.entity_type)
+
+    def extract(self) -> Any:
+        if not self._extract_iter:
+            self._extract_iter = self._get_extract_iter()
+
+        try:
+            return next(self._extract_iter)
+        except StopIteration:
+            return None
+
+    def get_scope(self) -> str:
+        return 'extractor.atlas_search_data'
+
+    def _get_driver(self) -> Any:
+        return Atlas(host=self.conf.get_string(AtlasSearchDataExtractor.ATLAS_URL_CONFIG_KEY),
+                     port=self.conf.get_string(AtlasSearchDataExtractor.ATLAS_PORT_CONFIG_KEY),
+                     username=self.conf.get_string(AtlasSearchDataExtractor.ATLAS_USERNAME_CONFIG_KEY),
+                     password=self.conf.get_string(AtlasSearchDataExtractor.ATLAS_PASSWORD_CONFIG_KEY),
+                     protocol=self.conf.get_string(AtlasSearchDataExtractor.ATLAS_PROTOCOL_CONFIG_KEY),
+                     validate_ssl=self.conf.get_bool(AtlasSearchDataExtractor.ATLAS_VALIDATE_SSL_CONFIG_KEY),
+                     timeout=self.conf.get_int(AtlasSearchDataExtractor.ATLAS_TIMEOUT_SECONDS_KEY),
+                     max_retries=self.conf.get_int(AtlasSearchDataExtractor.ATLAS_MAX_RETRIES_KEY))
+
+    def _get_approximate_count_of_entities(self) -> int:
+        try:
+            # Fetch the table entities based on query terms
+            count_query = deepcopy(self.basic_search_query)
+
+            minimal_parameters = {
+                'includeClassificationAttributes': False,
+                'includeSubClassifications': False
+            }
+
+            count_query.update(minimal_parameters)
+
+            search_results = self.driver.search_basic.create(data=count_query)
+
+            count = search_results._data.get("approximateCount")
+        except Exception as e:
+            count = 0
+
+        return count
+
+    def _get_entity_guids(self, start_offset: int) -> List[str]:
+        result = []
+
+        batch_start = start_offset
+        batch_end = start_offset + self.search_chunk_size
+
+        LOGGER.info(f'Collecting guids for batch: {batch_start}-{batch_end}')
+
+        _params = {'offset': str(batch_start), 'limit': str(self.search_chunk_size)}
+
+        full_params = deepcopy(self.dsl_search_query)
+        full_params.update(**_params)
+
+        try:
+            results = self.driver.search_dsl(**full_params)
+
+            for hit in results:
+                for entity in hit.entities:
+                    result.append(entity.guid)
+
+            return result
+        except Exception:
+            LOGGER.warning(f'Error processing batch: {batch_start}-{batch_end}', exc_info=True)
+
+            return []
+
+    def _get_entity_details(self, guid_list: List[str]) -> List:
+        result = []
+
+        LOGGER.info(f'Processing guids chunk of size: {len(guid_list)}')
+
+        try:
+            bulk_collection = self.driver.entity_bulk(guid=guid_list)
+
+            for collection in bulk_collection:
+                search_chunk = list(collection.entities_with_relationships(attributes=self.relationships))
+
+                result += search_chunk
+
+            return result
+        except Exception:
+            return []
+
+    @staticmethod
+    def split_list_to_chunks(input_list: List[Any], n: int) -> Generator:
+        """Yield successive n-sized chunks from lst."""
+        for i in range(0, len(input_list), n):
+            yield input_list[i:i + n]
+
+    def _execute_query(self) -> Any:
+        details_chunk_size = self.conf.get_int(AtlasSearchDataExtractor.ATLAS_DETAILS_CHUNK_SIZE_KEY)
+        process_pool_size = self.conf.get_int(AtlasSearchDataExtractor.PROCESS_POOL_SIZE_KEY)
+
+        guids = []
+
+        approximate_count = self._get_approximate_count_of_entities()
+
+        LOGGER.info(f'Received count: {approximate_count}')
+
+        if approximate_count > 0:
+            offsets = [i * self.search_chunk_size for i in range(int(approximate_count / self.search_chunk_size) + 1)]
+        else:
+            offsets = []
+
+        with multiprocessing.pool.ThreadPool(processes=process_pool_size) as pool:
+            guid_list = pool.map(self._get_entity_guids, offsets, chunksize=1)
+
+        for sub_list in guid_list:
+            guids += sub_list
+
+        LOGGER.info(f'Received guids: {len(guids)}')
+
+        if guids:
+            guids_chunks = AtlasSearchDataExtractor.split_list_to_chunks(guids, details_chunk_size)
+
+            with multiprocessing.pool.ThreadPool(processes=process_pool_size) as pool:
+                return_list = pool.map(self._get_entity_details, guids_chunks)
+
+            for sub_list in return_list:
+                for entry in sub_list:
+                    yield entry
+
+    def _get_extract_iter(self) -> Iterator[Any]:
+        for atlas_entity in self._execute_query():
+            model_dict = dict()
+
+            try:
+                data = atlas_entity.__dict__['_data']
+
+                for spec in self.field_mappings:
+                    model_field, atlas_field_path, _transform_spec, default_value = spec
+
+                    atlas_value = reduce(lambda x, y: x.get(y, dict()), atlas_field_path.split('.'),
+                                         data) or default_value
+
+                    transform_spec = _transform_spec or (lambda x: x)
+
+                    es_entity_value = transform_spec(atlas_value)
+                    model_dict[model_field] = es_entity_value
+
+                yield self.model_class(**model_dict)
+            except Exception:
+                LOGGER.warning(f'Error building model object.', exc_info=True)