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@andersen-lab

Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    15 4

  2. west-nile-genomics-wnv4k west-nile-genomics-wnv4k Public

    West Nile virus genomic data produced as part of the WestNile 4K Project

    1 3

  3. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 118 40

  4. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 105 30

  5. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Shell 25 5

Repositories

Showing 10 of 53 repositories
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Shell 25 5 1 0 Updated Nov 16, 2024
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 105 BSD-2-Clause 30 6 1 Updated Nov 16, 2024
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 4 0 0 0 Updated Nov 16, 2024
  • Freyja-SRA Public
    andersen-lab/Freyja-SRA’s past year of commit activity
    Python 3 GPL-3.0 1 0 0 Updated Nov 13, 2024
  • Mpox_West_Africa Public
    andersen-lab/Mpox_West_Africa’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 13, 2024
  • SARS-CoV-2_WasteWater_San-Diego Public
    andersen-lab/SARS-CoV-2_WasteWater_San-Diego’s past year of commit activity
    Python 12 2 0 0 Updated Nov 13, 2024
  • MixAmp Public

    Amplicon read simulator

    andersen-lab/MixAmp’s past year of commit activity
    Python 1 0 0 0 Updated Nov 12, 2024
  • Freyja-barcodes Public
    andersen-lab/Freyja-barcodes’s past year of commit activity
    HTML 4 BSD-2-Clause 0 1 1 Updated Oct 17, 2024
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 118 GPL-3.0 42 43 9 Updated Oct 10, 2024
  • bjorn Public
    andersen-lab/bjorn’s past year of commit activity
    Python 20 GPL-3.0 4 11 2 Updated Oct 2, 2024
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