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Upd readme and license
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mikessh committed Mar 9, 2022
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2 changes: 1 addition & 1 deletion LICENSE.txt
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VDJDB: A curated database of T-cell receptor sequences of known antigen specificity

Copyright 2015-2021 VDJdb Developers
Copyright 2015-2022 VDJdb Developers

Attribution-NoDerivatives 4.0 International

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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -260,9 +260,9 @@ The final database assembly can be found in the ``database/`` folder upon execut

Note that some statistics can be generated by running R markdown templates in ``summary/`` folder.

## Releasing the database and generating summary figures
## Building database release and generating summary figures

First make sure that you clone both [vdjdb-db repo](https://github.com/antigenomics/vdjdb-db) and [vdjdb-motifs repo](https://github.com/antigenomics/vdjdb-motifs) to the same folder, say ``~vcs``.
First make sure that you clone both [vdjdb-db repo](https://github.com/antigenomics/vdjdb-db) and [vdjdb-motifs repo](https://github.com/antigenomics/vdjdb-motifs) to the same folder, say ``~/vcs``.

Then navigate to ``vdjdb-db`` and run ``bash release.sh``. You can then find the output in ``~/vcs/vdjdb-db/database``, ``~/vcs/vdjdb-db/summary`` and ``~/vcs/vdjdb-motifs`` folders. Note that you have to check ``.Rmd`` files that will be executed and manually install missing R packages, as well as get [VDJtools binary](https://github.com/mikessh/vdjtools) and place it in the path specified in ``~/vcs/vdjdb-motifs/compute_vdjdb_motifs.Rmd``.

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