Release helper script

release.sh

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+# Compile database
+
+cd src/
+groovy -cp . BuildDatabase.groovy
+cd ..
+
+# Summary HTML
+
+cd summary/
+Rscript -e "rmarkdown::render('vdjdb_summary.Rmd')"
+groovy MakeEmbedableHtml.groovy
+cd ..
+
+
+# Compute motifs
+cp -r database/*.txt ../vdjdb-motifs/vdjdb_dump/
+
+cd ../vdjdb-motifs/
+Rscript -e "rmarkdown::render('compute_vdjdb_motifs.Rmd')"
+cp cluster_members.txt ../vdjdb-db/database/
+cp motif_pwms.txt ../vdjdb-db/database/
+cd ../vdjdb-db/
+
+# Gather database
+
+cd database/
+DD=`date +%F`
+mkdir vdjdb-$DD
+cp ../summary/vdjdb_summary_embed.html vdjdb-$DD/
+cp *.txt vdjdb-$DD/
+
+# Update latest version
+
+RR="https://github.com/antigenomics/vdjdb-db/releases/download/$DD/vdjdb-$DD.zip"
+RRP=`cat ../latest-version.txt | head -n 1`
+
+if [[ $RRP != $RR ]];
+then
+  echo "Releasing"
+  echo $RR  | cat - ../latest-version.txt > temp && mv temp ../latest-version.txt
+else
+  echo "Overwriting"
+fi
+
+cp ../LICENSE.txt vdjdb-$DD/
+cp ../latest-version.txt vdjdb-$DD/
+
+# ZIP together
+
+zip -rj vdjdb-$DD.zip vdjdb-$DD/
+
+echo "scp `hostname`.cdr3.net:`pwd`/vdjdb-$DD.zip ."