MLJ Code Review

.github/workflows/CI.yml

@@ -19,7 +19,7 @@ jobs:
       matrix:
         version:
           - '1.9'
-          - 'nightly'
+          - '~1.10.0-0' # Next version including pre-releases
         os:
           - ubuntu-latest
         arch:

Manifest.toml

@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.2"
+julia_version = "1.9.3"
 manifest_format = "2.0"
-project_hash = "99aeebafbd9af43367f4f14d050aa1bb5b9697f8"
+project_hash = "37e5522a114262839443afb76cd1d349314ac721"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
@@ -60,9 +60,9 @@ version = "0.1.5"
 
 [[deps.CPUSummary]]
 deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
-git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928"
+git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1"
 uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.Calculus]]
 deps = ["LinearAlgebra"]
@@ -90,9 +90,9 @@ version = "0.10.8"
 
 [[deps.CategoricalDistributions]]
 deps = ["CategoricalArrays", "Distributions", "Missings", "OrderedCollections", "Random", "ScientificTypes"]
-git-tree-sha1 = "da68989f027dcefa74d44a452c9e36af9730a70d"
+git-tree-sha1 = "ed760a4fde49997ff9360a780abe6e20175162aa"
 uuid = "af321ab8-2d2e-40a6-b165-3d674595d28e"
-version = "0.1.10"
+version = "0.1.11"
 
     [deps.CategoricalDistributions.extensions]
     UnivariateFiniteDisplayExt = "UnicodePlots"
@@ -114,9 +114,9 @@ version = "0.11.4"
 
 [[deps.Compat]]
 deps = ["UUIDs"]
-git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
+git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.9.0"
+version = "4.10.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [deps.Compat.extensions]
@@ -164,9 +164,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "938fe2981db009f531b6332e31c58e9584a2f9bd"
+git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.100"
+version = "0.25.102"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -197,10 +197,15 @@ version = "0.6.8"
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
-deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "f372472e8672b1d993e93dada09e23139b509f9e"
+deps = ["LinearAlgebra", "Random"]
+git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.5.0"
+version = "1.6.1"
+weakdeps = ["SparseArrays", "Statistics"]
+
+    [deps.FillArrays.extensions]
+    FillArraysSparseArraysExt = "SparseArrays"
+    FillArraysStatisticsExt = "Statistics"
 
 [[deps.FixedPointNumbers]]
 deps = ["Statistics"]
@@ -288,9 +293,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "5ab83e1679320064c29e8973034357655743d22d"
+git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.25"
+version = "0.3.26"
 
     [deps.LogExpFunctions.extensions]
     LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
@@ -389,9 +394,9 @@ version = "1.6.2"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1"
+git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.17"
+version = "0.11.19"
 
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -406,15 +411,15 @@ version = "0.2.1"
 
 [[deps.PrecompileTools]]
 deps = ["Preferences"]
-git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81"
+git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f"
 uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
-version = "1.1.2"
+version = "1.2.0"
 
 [[deps.Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1"
+git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.4.0"
+version = "1.4.1"
 
 [[deps.PrettyTables]]
 deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
@@ -428,15 +433,15 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[deps.ProgressMeter]]
 deps = ["Distributed", "Printf"]
-git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
+git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c"
 uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
-version = "1.7.2"
+version = "1.9.0"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
-git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
+git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1"
 uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
-version = "2.8.2"
+version = "2.9.1"
 
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -536,10 +541,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
 version = "0.8.8"
 
 [[deps.StaticArrayInterface]]
-deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"]
-git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb"
+deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"]
+git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25"
 uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
-version = "1.4.0"
+version = "1.4.1"
 weakdeps = ["OffsetArrays", "StaticArrays"]
 
     [deps.StaticArrayInterface.extensions]
@@ -548,9 +553,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"]
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
-git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881"
+git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.6.2"
+version = "1.6.5"
 weakdeps = ["Statistics"]
 
     [deps.StaticArrays.extensions]
@@ -574,15 +579,15 @@ version = "1.9.0"
 
 [[deps.StatsAPI]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7"
+git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.6.0"
+version = "1.7.0"
 
 [[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4"
+git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.34.0"
+version = "0.34.2"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
@@ -599,9 +604,10 @@ version = "1.3.0"
     InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
 
 [[deps.StringManipulation]]
-git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123"
+deps = ["PrecompileTools"]
+git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
 uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
-version = "0.3.0"
+version = "0.3.4"
 
 [[deps.SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
@@ -624,10 +630,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
 version = "1.0.1"
 
 [[deps.Tables]]
-deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"]
-git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec"
+deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
+git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.10.1"
+version = "1.11.0"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -664,9 +670,9 @@ version = "0.21.64"
 
 [[deps.VectorizedStatistics]]
 deps = ["LoopVectorization", "PrecompileTools", "Static"]
-git-tree-sha1 = "4b15274d6aab317efb7e0d06efac453cbd80fb84"
+git-tree-sha1 = "b9caa25667c7d7b158e13b68731645a5179459c1"
 uuid = "3b853605-1c98-4422-8364-4bd93ee0529e"
-version = "0.5.5"
+version = "0.5.6"
 
 [[deps.ZipFile]]
 deps = ["Libdl", "Printf", "Zlib_jll"]

Project.toml

@@ -21,6 +21,7 @@ ZipFile = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea"
 CategoricalArrays = "^0.10.8"
 CategoricalDistributions = "^0.1.10"
 LoopVectorization = "^0.12.165"
+MLJBase = "^1.0.0"
 MLJModelInterface = "^1.9.1"
 ProgressMeter = "^1.7.2"
 StaticArrays = "^1.6.2"
@@ -29,8 +30,8 @@ ZipFile = "^0.10.1"
 julia = "^1.9.2"
 
 [extras]
-MLJ = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7"
+MLJBase = "a7f614a8-145f-11e9-1d2a-a57a1082229d"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [targets]
-test = ["MLJ", "Test"]
+test = ["MLJBase", "Test"]