bioseq

🍀 bioseq - a Python module to handle biological sequences and perform common Bioinformatics operations. Developed as part of 'Algorithms for Bioinformatics', a subject @FCUP.

Reports

The package's development was divided in 3 stages, each with its own report.

• Basic Processing of Biological Sequences
• Pairwise Sequence Alignment
• Bioinformatics Pipeline

Requirements

• Python3

Install

$ pip3 install git+https://github.com/antonioalmeida/fcup-abi

Running Demos

cd demos
$ python3 run_me_<n>.py

Running Tests

$ python3 -m unittest test/*.py

Usage

Import the package

# sample.py

import bioseq as bs

Use the functions as demonstrated on the demos and the test suite.