Just a collection of implicit classes and helper functions that were side effect of my using ADAM.
Several new interesting methods to Feature and FeatureRDD classes. Now it is possible to:
- filter features by regions
- extract genes and transcript features
- save features by contig
- use some extra methods on features
- coverage search
- search in the genome
- search by feature
- region extraction from the fragment
- extract multiple regions at once
- extract by string matching
- filter by overlapping features
- several helper method to deal with DNA
- several methods for text search
Functions to run correlations and get normal DataFrame as a result (not Matrix) Ranks computations for dataframe
add the following to you build.sbt
resolvers += sbt.Resolver.bintrayRepo("comp-bio-aging", "main")
libraryDependencies += "comp.bio.aging" %% "adam-playground" % "0.0.13"