Updating anvil-edge README for edge-24-09-14-18-15-1

anvilproject · Sep 14, 2024 · 25bc2da · 25bc2da
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diff --git a/reports/anvil-edge/README.md b/reports/anvil-edge/README.md
diff --git a/reports/anvil-edge/tool-tests/chunks.json b/reports/anvil-edge/tool-tests/chunks.json
@@ -91,10 +91,10 @@
         "date2": "Mon Sep 02 06:26:43 2024"
     },
     "11": {
-        "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-07-18-15-1/results.html",
-        "date1": "Sat Sep 07 18:29:55 2024",
-        "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-07-18-15-1/tools.yml",
-        "run2": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-08-31-18-14-1/results.html",
-        "date2": "Sat Aug 31 18:29:37 2024"
+        "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/results.html",
+        "date1": "Sat Sep 14 18:30:22 2024",
+        "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/tools.yml",
+        "run2": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-07-18-15-1/results.html",
+        "date2": "Sat Sep 07 18:29:55 2024"
     }
 }
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/chunk.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/chunk.json
@@ -0,0 +1,7 @@
+{
+    "11": {
+        "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/results.html",
+        "date1": "Sat Sep 14 18:30:22 2024",
+        "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/tools.yml"
+    }
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/chunk.txt b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/chunk.txt
@@ -0,0 +1,26 @@
+-t datamash_ops --tool-version 746e8e4bf929
+-t deeptools_plot_pca --tool-version 69264da0ce77
+-t seq_filter_by_id --tool-version 141612f8c3e3
+-t bwameth --tool-version 29bdbc353f20
+-t medaka_consensus --tool-version db25ec99c3ea
+-t poretools_nucdist --tool-version a57b6350fd5d
+-t rseqc --tool-version 1a052c827e88
+-t rseqc --tool-version dbedfc5f5a3c
+-t samtools_fastx --tool-version a8d69aee190e
+-t samtools_slice_bam --tool-version a4a10c7924d1
+-t anndata_inspect --tool-version 688357ad5e61
+-t anndata_inspect --tool-version 286a24ac079c
+-t anndata_inspect --tool-version ee98d611afc6
+-t scater_create_qcmetric_ready_sce --tool-version 8f333f90d8d6
+-t scater_create_qcmetric_ready_sce --tool-version fd808de478b1
+-t gtf2gene_list --tool-version 1a642de6db01
+-t scanpy_run_umap --tool-version 0f98603d0116
+-t scanpy_run_umap --tool-version abae3d11d920
+-t text_processing --tool-version ddf54b12c295
+-t text_processing --tool-version 9ff72e942410
+-t lofreq_alnqual --tool-version 09d6e4693887
+-t bcftools_plugin_missing2ref --tool-version dfef7a353ed0
+-t bcftools_merge --tool-version e03f2f3ac3a9
+-t vcfannotategenotypes --tool-version 84959112d9a6
+-t vcfsort --tool-version f0580efedada
+-t ivar_variants --tool-version f95f403841ad
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/21fe4edd0a12c53f.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/21fe4edd0a12c53f.json
@@ -0,0 +1,48 @@
+{
+    "model_class": "Job",
+    "id": "21fe4edd0a12c53f",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T18:53:12.794299",
+    "update_time": "2024-09-14T18:53:19.425262",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-48hjc",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "cat '/galaxy/server/database/jobs_directory/000/81/configs/tmpylbbkjfl' && python '/galaxy/server/database/jobs_directory/000/81/configs/tmpylbbkjfl'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "__input_ext": "\"h5ad\"",
+        "dbkey": "\"?\"",
+        "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"",
+        "inspect": "{\"__current_case__\": 1, \"info\": \"X\"}"
+    },
+    "inputs": {
+        "input": {
+            "id": "647a2fcc1f340f34",
+            "src": "hda",
+            "uuid": "3d3d4b52-648e-435e-8b50-cf9ac17e9c8c"
+        }
+    },
+    "outputs": {
+        "X": {
+            "id": "102d7881f4a8e7c5",
+            "src": "hda",
+            "uuid": "f28472fa-bd52-419a-a1f7-fb97992d9965"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "\n\nimport anndata as ad\n    \n    \nimport pandas as pd\nfrom scipy import io\n\npd.options.display.precision = 15\n\nadata = ad.read('/galaxy/server/database/objects/3/d/3/dataset_3d3d4b52-648e-435e-8b50-cf9ac17e9c8c.dat')\n\nadata.to_df().to_csv('/galaxy/server/database/objects/f/2/8/dataset_f28472fa-bd52-419a-a1f7-fb97992d9965.dat', sep='\\t')\n\n",
+    "tool_stderr": "Observation names are not unique. To make them unique, call `.obs_names_make_unique`.\n",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "\n\nimport anndata as ad\n    \n    \nimport pandas as pd\nfrom scipy import io\n\npd.options.display.precision = 15\n\nadata = ad.read('/galaxy/server/database/objects/3/d/3/dataset_3d3d4b52-648e-435e-8b50-cf9ac17e9c8c.dat')\n\nadata.to_df().to_csv('/galaxy/server/database/objects/f/2/8/dataset_f28472fa-bd52-419a-a1f7-fb97992d9965.dat', sep='\\t')\n\n",
+    "stderr": "Observation names are not unique. To make them unique, call `.obs_names_make_unique`.\n",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/3acaad361db1a1a7.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/3acaad361db1a1a7.json
@@ -0,0 +1,48 @@
+{
+    "model_class": "Job",
+    "id": "3acaad361db1a1a7",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T19:16:29.643557",
+    "update_time": "2024-09-14T19:16:35.173886",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-trj6v",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "cat '/galaxy/server/database/jobs_directory/000/166/configs/tmph6vrsr6k' && python '/galaxy/server/database/jobs_directory/000/166/configs/tmph6vrsr6k'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "__input_ext": "\"h5ad\"",
+        "dbkey": "\"?\"",
+        "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"",
+        "inspect": "{\"__current_case__\": 6, \"info\": \"obsm\", \"obsm_info\": \"X_diffmap\"}"
+    },
+    "inputs": {
+        "input": {
+            "id": "135d6f44ec9cd6b3",
+            "src": "hda",
+            "uuid": "f28b9b0a-124d-4152-b0c8-e6f2b3203d4d"
+        }
+    },
+    "outputs": {
+        "obsm_X_diffmap": {
+            "id": "6e4324b54cce120d",
+            "src": "hda",
+            "uuid": "7bb324d5-c9f6-4621-a9b4-35bf9994ba09"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "\n\nimport anndata as ad\n    \n    \nimport pandas as pd\nfrom scipy import io\n\npd.options.display.precision = 15\n\nadata = ad.read('/galaxy/server/database/objects/f/2/8/dataset_f28b9b0a-124d-4152-b0c8-e6f2b3203d4d.dat')\n\npd.DataFrame(adata.obsm['X_diffmap']).to_csv(\"/galaxy/server/database/objects/7/b/b/dataset_7bb324d5-c9f6-4621-a9b4-35bf9994ba09.dat\", sep=\"\\t\", index = False)\n\n",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "\n\nimport anndata as ad\n    \n    \nimport pandas as pd\nfrom scipy import io\n\npd.options.display.precision = 15\n\nadata = ad.read('/galaxy/server/database/objects/f/2/8/dataset_f28b9b0a-124d-4152-b0c8-e6f2b3203d4d.dat')\n\npd.DataFrame(adata.obsm['X_diffmap']).to_csv(\"/galaxy/server/database/objects/7/b/b/dataset_7bb324d5-c9f6-4621-a9b4-35bf9994ba09.dat\", sep=\"\\t\", index = False)\n\n",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/43bce9b5e8a62429.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/43bce9b5e8a62429.json
@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "43bce9b5e8a62429",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T18:45:33.143103",
+    "update_time": "2024-09-14T18:45:44.382351",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-x4l5j",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/53/registry.xml' '/galaxy/server/database/jobs_directory/000/53/upload_params.json' '69:/galaxy/server/database/objects/2/0/5/dataset_2050a44e-96e8-49e8-95b8-ce9dd56b2f1e_files:/galaxy/server/database/objects/2/0/5/dataset_2050a44e-96e8-49e8-95b8-ce9dd56b2f1e.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_7jpt638c\"",
+        "files_metadata": "{\"__current_case__\": 314, \"file_type\": \"sam\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"bam2fq.002.sam\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_55juukmi\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"sam\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "2abb2be1efe0638a",
+            "src": "hda",
+            "uuid": "2050a44e-96e8-49e8-95b8-ce9dd56b2f1e"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/47b6952271ba3ed7.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/47b6952271ba3ed7.json
@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "47b6952271ba3ed7",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T18:33:47.129772",
+    "update_time": "2024-09-14T18:33:57.045216",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-zwnz9",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/8/registry.xml' '/galaxy/server/database/jobs_directory/000/8/upload_params.json' '9:/galaxy/server/database/objects/5/f/1/dataset_5f179733-44e8-4312-94b2-e0f12da547e1_files:/galaxy/server/database/objects/5/f/1/dataset_5f179733-44e8-4312-94b2-e0f12da547e1.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_40ql72t2\"",
+        "files_metadata": "{\"__current_case__\": 75, \"file_type\": \"fasta\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"k12_ten_proteins.fasta\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_o21qeltb\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"fasta\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "1f94dc98744315fb",
+            "src": "hda",
+            "uuid": "5f179733-44e8-4312-94b2-e0f12da547e1"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/51a4def9d9f44d69.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/51a4def9d9f44d69.json
@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "51a4def9d9f44d69",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T19:24:31.774846",
+    "update_time": "2024-09-14T19:24:42.769711",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-fmzhj",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/205/registry.xml' '/galaxy/server/database/jobs_directory/000/205/upload_params.json' '267:/galaxy/server/database/objects/2/3/4/dataset_2344009f-c0fb-42c9-8bd8-aa2c73bcce3c_files:/galaxy/server/database/objects/2/3/4/dataset_2344009f-c0fb-42c9-8bd8-aa2c73bcce3c.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params_a7qni9pj\"",
+        "files_metadata": "{\"__current_case__\": 342, \"file_type\": \"vcf\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"merge.3.a.vcf\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_k2b582e7\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"vcf\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "e7fa774b59e58dfe",
+            "src": "hda",
+            "uuid": "2344009f-c0fb-42c9-8bd8-aa2c73bcce3c"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/5f79155f4e88ddea.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/5f79155f4e88ddea.json
@@ -0,0 +1,53 @@
+{
+    "model_class": "Job",
+    "id": "5f79155f4e88ddea",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T19:04:55.267034",
+    "update_time": "2024-09-14T19:05:02.355819",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-nbm2v",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "cat '/galaxy/server/database/jobs_directory/000/124/configs/tmpf05m5sdn' && python '/galaxy/server/database/jobs_directory/000/124/configs/tmpf05m5sdn'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "__input_ext": "\"h5ad\"",
+        "dbkey": "\"?\"",
+        "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"",
+        "inspect": "{\"__current_case__\": 5, \"info\": \"uns\", \"uns_info\": \"pca\"}"
+    },
+    "inputs": {
+        "input": {
+            "id": "206cc4c20070e66b",
+            "src": "hda",
+            "uuid": "64079042-483a-460d-b11c-dd51765d2c63"
+        }
+    },
+    "outputs": {
+        "uns_pca_variance": {
+            "id": "6163b63ad86d5b37",
+            "src": "hda",
+            "uuid": "1f77d383-4613-49a6-87e4-4065935cf4ae"
+        },
+        "uns_pca_variance_ratio": {
+            "id": "0c29fc09fbd97240",
+            "src": "hda",
+            "uuid": "54dd47a6-2d33-4b05-a626-95c4c00f1596"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "\n\nimport anndata as ad\n    \n    \nimport pandas as pd\nfrom scipy import io\n\npd.options.display.precision = 15\n\nadata = ad.read('/galaxy/server/database/objects/6/4/0/dataset_64079042-483a-460d-b11c-dd51765d2c63.dat')\n\npd.DataFrame(adata.uns['pca']['variance']).to_csv(\"/galaxy/server/database/objects/1/f/7/dataset_1f77d383-4613-49a6-87e4-4065935cf4ae.dat\", sep=\"\\t\", index = False)\npd.DataFrame(adata.uns['pca']['variance_ratio']).to_csv(\"/galaxy/server/database/objects/5/4/d/dataset_54dd47a6-2d33-4b05-a626-95c4c00f1596.dat\", sep=\"\\t\", index = False)\n\n",
+    "tool_stderr": "Observation names are not unique. To make them unique, call `.obs_names_make_unique`.\n",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "\n\nimport anndata as ad\n    \n    \nimport pandas as pd\nfrom scipy import io\n\npd.options.display.precision = 15\n\nadata = ad.read('/galaxy/server/database/objects/6/4/0/dataset_64079042-483a-460d-b11c-dd51765d2c63.dat')\n\npd.DataFrame(adata.uns['pca']['variance']).to_csv(\"/galaxy/server/database/objects/1/f/7/dataset_1f77d383-4613-49a6-87e4-4065935cf4ae.dat\", sep=\"\\t\", index = False)\npd.DataFrame(adata.uns['pca']['variance_ratio']).to_csv(\"/galaxy/server/database/objects/5/4/d/dataset_54dd47a6-2d33-4b05-a626-95c4c00f1596.dat\", sep=\"\\t\", index = False)\n\n",
+    "stderr": "Observation names are not unique. To make them unique, call `.obs_names_make_unique`.\n",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}
diff --git a/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/687717006182b384.json b/reports/anvil-edge/tool-tests/edge-24-09-14-18-15-1/errors/687717006182b384.json
@@ -0,0 +1,45 @@
+{
+    "model_class": "Job",
+    "id": "687717006182b384",
+    "history_id": "0376a3bf8eef8d1d",
+    "tool_id": "upload1",
+    "state": "error",
+    "exit_code": null,
+    "create_time": "2024-09-14T19:23:05.537185",
+    "update_time": "2024-09-14T19:23:16.434656",
+    "galaxy_version": "24.1",
+    "external_id": "gxy-8q4vx",
+    "handler": null,
+    "job_runner_name": null,
+    "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/198/registry.xml' '/galaxy/server/database/jobs_directory/000/198/upload_params.json' '260:/galaxy/server/database/objects/1/f/4/dataset_1f478469-5730-4cbe-8d16-3c7b45b1bc7b_files:/galaxy/server/database/objects/1/f/4/dataset_1f478469-5730-4cbe-8d16-3c7b45b1bc7b.dat'",
+    "user_email": "tests@fake.org",
+    "command_version": null,
+    "params": {
+        "paramfile": "\"/galaxy/server/database/tmp/upload_params__u78zq6h\"",
+        "files_metadata": "{\"__current_case__\": 342, \"file_type\": \"vcf\"}",
+        "dbkey": "\"?\"",
+        "force_composite": "\"false\"",
+        "files": "[{\"NAME\": \"merge.2.b.vcf\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_jle6gwxu\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]",
+        "file_count": "\"auto\"",
+        "file_type": "\"vcf\""
+    },
+    "inputs": {},
+    "outputs": {
+        "output0": {
+            "id": "df464cb3ac900cba",
+            "src": "hda",
+            "uuid": "1f478469-5730-4cbe-8d16-3c7b45b1bc7b"
+        }
+    },
+    "copied_from_job_id": null,
+    "output_collections": {},
+    "tool_stdout": "",
+    "tool_stderr": "",
+    "job_stdout": null,
+    "job_stderr": null,
+    "stdout": "",
+    "stderr": "",
+    "job_messages": null,
+    "dependencies": [],
+    "job_metrics": []
+}