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Updating anvil-edge README for edge-24-10-07-18-17-1
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7 changes: 7 additions & 0 deletions
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reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/chunk.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| { | ||
| "1": { | ||
| "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/results.html", | ||
| "date1": "Mon Oct 07 18:33:26 2024", | ||
| "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/tools.yml" | ||
| } | ||
| } |
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reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/chunk.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| -t spades --tool-version b8c00ce5dfa0 | ||
| -t deeptools_bam_pe_fragmentsize --tool-version 62eb6d63f582 | ||
| -t fastq_filter --tool-version 81a9090d6df3 | ||
| -t trimmomatic --tool-version d94aff5ee623 | ||
| -t mummer_nucmer --tool-version 636b049e6141 | ||
| -t poretools_occupancy --tool-version 338d15b8d6fb | ||
| -t salmon --tool-version cc05793bb896 | ||
| -t samtools_reheader --tool-version 30388d878f81 | ||
| -t samtools_bedcov --tool-version 9149ad20699a | ||
| -t music_compare --tool-version 4447ed460308 | ||
| -t dropletutils_empty_drops --tool-version fa662ca7ae7f | ||
| -t scater_plot_dist_scatter --tool-version 2e41b35b5bdd | ||
| -t scater_plot_dist_scatter --tool-version ef4c80837bc5 | ||
| -t retrieve_scxa --tool-version 72b6e1747e37 | ||
| -t filter_tabular --tool-version 6544e4b87a4f | ||
| -t gff3_rebase --tool-version 238981ed43b7 | ||
| -t snpeff --tool-version 74aebe30fb52 | ||
| -t snpeff --tool-version cfcf33df7fc0 | ||
| -t bcftools_mpileup --tool-version 0dbff46d5a1b | ||
| -t bcftools_filter --tool-version 6ca7c55a27e8 | ||
| -t vcfcombine --tool-version 1f0ba67cc85a | ||
| -t vcffilter --tool-version fa24bf0598f4 |
45 changes: 45 additions & 0 deletions
45
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/0f11f34351ddd168.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "0f11f34351ddd168", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "upload1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T18:49:44.311226", | ||
| "update_time": "2024-10-07T18:49:55.388744", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-85nfx", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/52/registry.xml' '/galaxy/server/database/jobs_directory/000/52/upload_params.json' '92:/galaxy/server/database/objects/6/2/0/dataset_620f35d4-eddd-4c3b-8849-6b1662418cd3_files:/galaxy/server/database/objects/6/2/0/dataset_620f35d4-eddd-4c3b-8849-6b1662418cd3.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_7aqfl_bu\"", | ||
| "files_metadata": "{\"__current_case__\": 81, \"file_type\": \"fastqsanger\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"Illumina_SG_R1.fastq\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_58xf3ihb\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"fastqsanger\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "efb898c190823237", | ||
| "src": "hda", | ||
| "uuid": "620f35d4-eddd-4c3b-8849-6b1662418cd3" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
45 changes: 45 additions & 0 deletions
45
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/1565fe14c349cd4b.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "1565fe14c349cd4b", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "upload1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T18:35:33.838490", | ||
| "update_time": "2024-10-07T18:35:45.173624", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-k9qtq", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/5/registry.xml' '/galaxy/server/database/jobs_directory/000/5/upload_params.json' '9:/galaxy/server/database/objects/f/6/2/dataset_f6203b24-6a5a-4092-9270-f04bd1a2ba64_files:/galaxy/server/database/objects/f/6/2/dataset_f6203b24-6a5a-4092-9270-f04bd1a2ba64.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_225srdsn\"", | ||
| "files_metadata": "{\"__current_case__\": 75, \"file_type\": \"fasta\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"ecoli_1K_2.fasta\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_xethl0jk\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"fasta\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "29d0bbe56347b804", | ||
| "src": "hda", | ||
| "uuid": "f6203b24-6a5a-4092-9270-f04bd1a2ba64" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
52 changes: 52 additions & 0 deletions
52
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/1f1a29fd21cfb6d9.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,52 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "1f1a29fd21cfb6d9", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T18:49:00.841022", | ||
| "update_time": "2024-10-07T18:49:06.166113", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-cx8df", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "if [ -z \"$TRIMMOMATIC_JAR_PATH\" ]; then export TRIMMOMATIC_JAR_PATH=$(dirname $(readlink -e $(which trimmomatic))); fi && if [ -z \"$TRIMMOMATIC_ADAPTERS_PATH\" ]; then export TRIMMOMATIC_ADAPTERS_PATH=$(dirname $(readlink -e $(which trimmomatic)))/adapters; fi && ln -s '/galaxy/server/database/objects/9/a/b/dataset_9ab55355-84b6-485b-b627-a986ef56f643.dat' fastq_in.'fastqsanger.gz' && java ${_JAVA_OPTIONS:--Xmx8G} -jar $TRIMMOMATIC_JAR_PATH/trimmomatic.jar SE -threads ${GALAXY_SLOTS:-6} fastq_in.'fastqsanger.gz' fastq_out.'fastqsanger.gz' SLIDINGWINDOW:4:20 2>&1 | tee trimmomatic.log && if [ -z \"$(tail -1 trimmomatic.log | grep \"Completed successfully\")\" ]; then echo \"Trimmomatic did not finish successfully\" >&2 ; exit 1 ; fi && mv fastq_out.'fastqsanger.gz' '/galaxy/server/database/objects/6/f/5/dataset_6f575944-0535-45e1-96e9-0a5739e5d152.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "__input_ext": "\"fastqsanger.gz\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "output_err": "false", | ||
| "output_logs": "false", | ||
| "operations": "[{\"__index__\": 0, \"operation\": {\"__current_case__\": 0, \"name\": \"SLIDINGWINDOW\", \"required_quality\": \"20\", \"window_size\": \"4\"}}]", | ||
| "illuminaclip": "{\"__current_case__\": 1, \"do_illuminaclip\": false}", | ||
| "readtype": "{\"__current_case__\": 0, \"fastq_in\": {\"values\": [{\"id\": 84, \"src\": \"hda\"}]}, \"single_or_paired\": \"se\"}" | ||
| }, | ||
| "inputs": { | ||
| "readtype|fastq_in": { | ||
| "id": "19969450d1bd173f", | ||
| "src": "hda", | ||
| "uuid": "9ab55355-84b6-485b-b627-a986ef56f643" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "fastq_out": { | ||
| "id": "a087a95e62713871", | ||
| "src": "hda", | ||
| "uuid": "6f575944-0535-45e1-96e9-0a5739e5d152" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "Picked up _JAVA_OPTIONS: -Xmx12G -Xms1G\nTrimmomaticSE: Started with arguments:\n -threads 6 fastq_in.fastqsanger.gz fastq_out.fastqsanger.gz SLIDINGWINDOW:4:20\nQuality encoding detected as phred33\nInput Reads: 10 Surviving: 8 (80.00%) Dropped: 2 (20.00%)\nTrimmomaticSE: Completed successfully\n", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "Picked up _JAVA_OPTIONS: -Xmx12G -Xms1G\nTrimmomaticSE: Started with arguments:\n -threads 6 fastq_in.fastqsanger.gz fastq_out.fastqsanger.gz SLIDINGWINDOW:4:20\nQuality encoding detected as phred33\nInput Reads: 10 Surviving: 8 (80.00%) Dropped: 2 (20.00%)\nTrimmomaticSE: Completed successfully\n", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
45 changes: 45 additions & 0 deletions
45
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/2495d7720ebf91c9.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "2495d7720ebf91c9", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "upload1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T19:15:02.370611", | ||
| "update_time": "2024-10-07T19:15:13.747010", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-4v9x6", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/157/registry.xml' '/galaxy/server/database/jobs_directory/000/157/upload_params.json' '210:/galaxy/server/database/objects/f/b/c/dataset_fbc7d015-aad4-41c8-a234-1720a7682f2c_files:/galaxy/server/database/objects/f/b/c/dataset_fbc7d015-aad4-41c8-a234-1720a7682f2c.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_y61gom13\"", | ||
| "files_metadata": "{\"__current_case__\": 36, \"file_type\": \"bam\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"mpileup.3.bam\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_3poz0ovg\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"bam\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "0711d4b4102d4ec3", | ||
| "src": "hda", | ||
| "uuid": "fbc7d015-aad4-41c8-a234-1720a7682f2c" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
45 changes: 45 additions & 0 deletions
45
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/26bffa2e0f2b61a1.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "26bffa2e0f2b61a1", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "upload1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T19:16:07.715405", | ||
| "update_time": "2024-10-07T19:16:18.860358", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-2vfn7", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/164/registry.xml' '/galaxy/server/database/jobs_directory/000/164/upload_params.json' '217:/galaxy/server/database/objects/8/1/e/dataset_81e564e4-2ef8-4b00-a416-2e1eae26334c_files:/galaxy/server/database/objects/8/1/e/dataset_81e564e4-2ef8-4b00-a416-2e1eae26334c.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_e6ak2j6g\"", | ||
| "files_metadata": "{\"__current_case__\": 36, \"file_type\": \"bam\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"mpileup.1.bam\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_3u3s2nua\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"bam\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "ed3776a101861bd7", | ||
| "src": "hda", | ||
| "uuid": "81e564e4-2ef8-4b00-a416-2e1eae26334c" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
49 changes: 49 additions & 0 deletions
49
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/3f0857f50d64aa70.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "3f0857f50d64aa70", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/3.3.1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T19:11:29.564107", | ||
| "update_time": "2024-10-07T19:11:33.952105", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-pfxvk", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "python '/cvmfs/cloud.galaxyproject.org/tools/toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/90f657745fea/filter_tabular/filter_tabular.py' -i '/galaxy/server/database/objects/b/8/2/dataset_b826ceaf-85b3-4ba1-bda2-b04415331da6.dat' --comment_char '#' -j '/galaxy/server/database/jobs_directory/000/138/configs/tmpzcq3lsep' -o '/galaxy/server/database/objects/7/e/3/dataset_7e3931ba-8db9-463b-8d8f-e602e33c8e90.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "__input_ext": "\"tabular\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "linefilters": "[{\"__index__\": 0, \"filter\": {\"__current_case__\": 1, \"comment_char\": \"35\", \"filter_type\": \"comment\"}}, {\"__index__\": 1, \"filter\": {\"__current_case__\": 8, \"filter_type\": \"regex\", \"regex_action\": \"include_find\", \"regex_pattern\": \"^\\\\d+\"}}, {\"__index__\": 2, \"filter\": {\"__current_case__\": 3, \"filter_type\": \"append_line_num\"}}, {\"__index__\": 3, \"filter\": {\"__current_case__\": 9, \"columns\": \"c7,c5,c6\", \"filter_type\": \"select_columns\"}}, {\"__index__\": 4, \"filter\": {\"__current_case__\": 12, \"columns\": \"c2,c3\", \"filter_type\": \"normalize\", \"separator\": \",\"}}, {\"__index__\": 5, \"filter\": {\"__current_case__\": 8, \"filter_type\": \"regex\", \"regex_action\": \"exclude_match\", \"regex_pattern\": \"^\\\\d+\\\\t\\\\t\"}}]", | ||
| "comment_char": "true" | ||
| }, | ||
| "inputs": { | ||
| "input": { | ||
| "id": "f495209c665980f4", | ||
| "src": "hda", | ||
| "uuid": "b826ceaf-85b3-4ba1-bda2-b04415331da6" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "output": { | ||
| "id": "1a97b4f5c69e2367", | ||
| "src": "hda", | ||
| "uuid": "7e3931ba-8db9-463b-8d8f-e602e33c8e90" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
45 changes: 45 additions & 0 deletions
45
reports/anvil-edge/tool-tests/edge-24-10-07-18-17-1/errors/45850808609e6cd4.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "45850808609e6cd4", | ||
| "history_id": "1bc176cff4c492ba", | ||
| "tool_id": "upload1", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "create_time": "2024-10-07T18:55:23.213196", | ||
| "update_time": "2024-10-07T18:55:33.612210", | ||
| "galaxy_version": "24.1", | ||
| "external_id": "gxy-njbdg", | ||
| "handler": null, | ||
| "job_runner_name": null, | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/80/registry.xml' '/galaxy/server/database/jobs_directory/000/80/upload_params.json' '129:/galaxy/server/database/objects/4/d/c/dataset_4dcb336e-fc3c-4bdc-ac29-5846a39620fd_files:/galaxy/server/database/objects/4/d/c/dataset_4dcb336e-fc3c-4bdc-ac29-5846a39620fd.dat'", | ||
| "user_email": "tests@fake.org", | ||
| "command_version": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_33k1rctp\"", | ||
| "files_metadata": "{\"__current_case__\": 75, \"file_type\": \"fasta\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"human_aqp3.fasta\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_hfdta05i\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"fasta\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "fe461a822940a882", | ||
| "src": "hda", | ||
| "uuid": "4dcb336e-fc3c-4bdc-ac29-5846a39620fd" | ||
| } | ||
| }, | ||
| "copied_from_job_id": null, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stdout": "", | ||
| "stderr": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "job_metrics": [] | ||
| } |
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