-
Notifications
You must be signed in to change notification settings - Fork 4
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Updating anvil-production README for prod-24-08-31-00-32-1
- Loading branch information
1 parent
2574755
commit b09397b
Showing
15 changed files
with
15,169 additions
and
6 deletions.
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
7 changes: 7 additions & 0 deletions
7
reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/chunk.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| { | ||
| "10": { | ||
| "run1": "https://htmlpreview.github.io/?https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/results.html", | ||
| "date1": "Sat Aug 31 00:46:38 2024", | ||
| "tools": "https://github.com/anvilproject/galaxy-tests/blob/main/reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/tools.yml" | ||
| } | ||
| } |
15 changes: 15 additions & 0 deletions
15
reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/chunk.txt
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| -t annotatemyids --tool-version 44018dd6b447 | ||
| -t datamash_reverse --tool-version 0f1724dd59d2 | ||
| -t trimmomatic --tool-version d94aff5ee623 | ||
| -t samtools_fixmate --tool-version bc0cc7bfbfe9 | ||
| -t sam_to_bam --tool-version cf1ffd88f895 | ||
| -t bcftools_plugin_setgt --tool-version 8abfcd1a6949 | ||
| -t bcftools_call --tool-version 072f606e2e69 | ||
| -t vcfbreakcreatemulti --tool-version 9fd5d91eb91b | ||
| -t vcfselectsamples --tool-version 2ba3b87f904f | ||
| -t poretools_occupancy --tool-version 338d15b8d6fb | ||
| -t deeptools_plot_heatmap --tool-version a4dfb122e52b | ||
| -t deeptools_plot_profile --tool-version c361b12d207a | ||
| -t lofreq_filter --tool-version 7dfca164d2e3 | ||
| -t salmon --tool-version cc05793bb896 | ||
| -t mummer_mummerplot --tool-version ebe3b0f84de9 |
44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/errors/11cad5ead035a287.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "11cad5ead035a287", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2024-08-31T01:02:43.374836", | ||
| "create_time": "2024-08-31T01:02:34.252524", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "e3d7d64960a69014", | ||
| "external_id": "gxy-k9chm", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/69/registry.xml' '/galaxy/server/database/jobs_directory/000/69/upload_params.json' '96:/galaxy/server/database/objects/c/e/9/dataset_ce9b1528-0314-446f-ad72-e4292698d0db_files:/galaxy/server/database/objects/c/e/9/dataset_ce9b1528-0314-446f-ad72-e4292698d0db.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params__9wuud9a\"", | ||
| "files_metadata": "{\"__current_case__\": 328, \"file_type\": \"vcf\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"mpileup.X.vcf\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_b9laoohr\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"vcf\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "34fc5206d3e4f55a", | ||
| "src": "hda", | ||
| "uuid": "ce9b1528-0314-446f-ad72-e4292698d0db" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
52 changes: 52 additions & 0 deletions
52
reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/errors/5a0031587582f889.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,52 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "5a0031587582f889", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2024-08-31T00:48:53.241944", | ||
| "create_time": "2024-08-31T00:47:40.390388", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.5.0.1", | ||
| "history_id": "e3d7d64960a69014", | ||
| "external_id": "gxy-lbr27", | ||
| "command_line": "Rscript '/galaxy/server/database/jobs_directory/000/2/configs/tmpnjob6kqo'", | ||
| "traceback": null, | ||
| "params": { | ||
| "__input_ext": "\"tabular\"", | ||
| "dbkey": "\"?\"", | ||
| "chromInfo": "\"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len\"", | ||
| "rscriptOpt": "false", | ||
| "remove_dups": "false", | ||
| "output_cols": "[\"ENSEMBL\", \"ENTREZID\", \"SYMBOL\", \"GENENAME\"]", | ||
| "id_type": "\"SYMBOL\"", | ||
| "organism": "\"Hs\"", | ||
| "file_has_header": "false" | ||
| }, | ||
| "inputs": { | ||
| "id_file": { | ||
| "id": "e3d7d64960a69014", | ||
| "src": "hda", | ||
| "uuid": "fed353ea-e04d-4bd1-9190-a3f8e8a55ab4" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "out_tab": { | ||
| "id": "5a0031587582f889", | ||
| "src": "hda", | ||
| "uuid": "369b74f1-b270-45f9-9f35-c6f827c575e7" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
44 changes: 44 additions & 0 deletions
44
reports/anvil-production/tool-tests/prod-24-08-31-00-32-1/errors/ab45d190b61c9127.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "model_class": "Job", | ||
| "id": "ab45d190b61c9127", | ||
| "state": "error", | ||
| "exit_code": null, | ||
| "update_time": "2024-08-31T01:11:27.220217", | ||
| "create_time": "2024-08-31T01:11:18.898229", | ||
| "galaxy_version": "23.1", | ||
| "command_version": null, | ||
| "copied_from_job_id": null, | ||
| "tool_id": "upload1", | ||
| "history_id": "e3d7d64960a69014", | ||
| "external_id": "gxy-kvcgf", | ||
| "command_line": "python '/galaxy/server/database/tools/data_source/upload.py' '/galaxy/server' '/galaxy/server/database/jobs_directory/000/106/registry.xml' '/galaxy/server/database/jobs_directory/000/106/upload_params.json' '135:/galaxy/server/database/objects/e/9/a/dataset_e9ae3578-02e9-47f6-98ef-9177f1314c59_files:/galaxy/server/database/objects/e/9/a/dataset_e9ae3578-02e9-47f6-98ef-9177f1314c59.dat'", | ||
| "traceback": null, | ||
| "params": { | ||
| "paramfile": "\"/galaxy/server/database/tmp/upload_params_1i0rh2ou\"", | ||
| "files_metadata": "{\"__current_case__\": 677, \"file_type\": \"auto\"}", | ||
| "dbkey": "\"?\"", | ||
| "force_composite": "\"false\"", | ||
| "files": "[{\"NAME\": \"transcripts.fasta\", \"__index__\": 0, \"auto_decompress\": \"Yes\", \"dbkey\": \"\", \"file_data\": \"/galaxy/server/database/tmp/upload_file_data_lo8ps8to\", \"file_type\": \"\", \"ftp_files\": null, \"space_to_tab\": null, \"to_posix_lines\": \"Yes\", \"url_paste\": null, \"uuid\": null}]", | ||
| "file_count": "\"auto\"", | ||
| "file_type": "\"auto\"" | ||
| }, | ||
| "inputs": {}, | ||
| "outputs": { | ||
| "output0": { | ||
| "id": "55051c084c1fc963", | ||
| "src": "hda", | ||
| "uuid": "e9ae3578-02e9-47f6-98ef-9177f1314c59" | ||
| } | ||
| }, | ||
| "output_collections": {}, | ||
| "tool_stdout": "", | ||
| "tool_stderr": "", | ||
| "job_stdout": null, | ||
| "job_stderr": null, | ||
| "stderr": "", | ||
| "stdout": "", | ||
| "job_messages": null, | ||
| "dependencies": [], | ||
| "user_email": "tests@fake.org", | ||
| "job_metrics": [] | ||
| } |
Oops, something went wrong.