update cpr

aodn · Feb 7, 2024 · a44020e · a44020e
1 parent 43a448d
commit a44020e
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Showing 5 changed files with 48 additions and 24 deletions.
diff --git a/cpr_data/cpr_phyto_changelog.dataresource.yaml b/cpr_data/cpr_phyto_changelog.dataresource.yaml
@@ -13,12 +13,14 @@ schema:
   - name: TAXON_NAME
     title: "Taxonomic name that the species is currently identified as (post startdate)"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: STARTDATE
     title: "Date from which the taxon_name was first consistently used (formatted string: YYYY-MM-DD)"
     type: date
     format: "%Y-%m-%d"
-    required: true    
+    constraints:
+      required: true    
   - name: PARENT_NAME
     title: "Taxon name which the species was known by before the start date"
     type: string

diff --git a/cpr_data/cpr_phyto_raw.dataresource.yaml b/cpr_data/cpr_phyto_raw.dataresource.yaml
@@ -13,15 +13,18 @@ schema:
   - name: SAMPLE
     title: "Unique identifier for sample"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TAXON_NAME
     title: "Scientific name of taxa"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TAXON_GROUP
     title: "Functional group assigned to taxa"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: GENUS
     title: "Genus name of taxa"
     type: string
@@ -37,19 +40,22 @@ schema:
   - name: PHYTO_ABUNDANCE_M3
     title: "Abundance of the taxa in cells per litre of water"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: BIOVOL_UM3M3
     title: "Biovolume of the taxa in um3 per cubic metre of water"
     type: number
     required: false
   - name: FOV_COUNT
     title: "Number of the taxa counted"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: SAMPVOL_M3
     title: "Volume of sample analysed (cubic metres)"
     type: number
-    required: true   
+    constraints:
+      required: true   
   primaryKey:
   - SAMPLE
   - TAXON_NAME

diff --git a/cpr_data/cpr_samp.dataresource.yaml b/cpr_data/cpr_samp.dataresource.yaml
@@ -13,34 +13,40 @@ schema:
   - name: TRIP_CODE
     title: "Unique identifier for trip"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: SAMPLE
     title: "Unique sample identifier"
     type: string
-    required: true  
+    constraints:
+      required: true  
   - name: REGION
     title: "Region identifier"
     type: string
-    required: true      
+    constraints:
+      required: true      
   - name: LATITUDE
     title: "Latitude of sampling in decimal degrees North"
     type: number
-    required: true
+    constraints:
+      required: true
     minimum: -90
     maximum: 90    
   - name: LONGITUDE
     title: "Longitude of sampling in decimal degrees East"
     type: number
     minimum: -180
     maximum: 180
-    required: true     
+    constraints:
+      required: true     
   - name: SAMPLEDATEUTC
     title: "Date & time of sample in UTC time (formatted string)"
     type: datetime
     # format string *must* be specified using standard Python/C strptime specification
     # https://docs.python.org/2/library/datetime.html#strftime-strptime-behavior
     format: "%Y-%m-%d %H:%M:%S"
-    required: true
+    constraints:
+      required: true
   - name: SAMPLEDATELOCAL
     title: "Date & time of sample in local time (formatted string)"
     type: datetime
@@ -59,7 +65,8 @@ schema:
   - name: SAMPLETYPE
     title: "sample type code"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: GHRSST_6D_DEGC
     title: "IMOS L3S Day and Night gridded multiple-sensor multiple-swath Australian region HRPT AVHRR foundation SST"
     type: number

diff --git a/cpr_data/cpr_zoop_changelog.dataresource.yaml b/cpr_data/cpr_zoop_changelog.dataresource.yaml
@@ -13,12 +13,14 @@ schema:
   - name: TAXON_NAME
     title: "Taxonomic name that the species is currently identified as (post startdate)"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: STARTDATE
     title: "Date from which the taxon_name was first consistently used (formatted string: YYYY-MM-DD)"
     type: date
     format: "%Y-%m-%d"
-    required: true    
+    constraints:
+      required: true    
   - name: PARENT_NAME
     title: "Taxon name which the species was known by before the start date"
     type: string

diff --git a/cpr_data/cpr_zoop_raw.dataresource.yaml b/cpr_data/cpr_zoop_raw.dataresource.yaml
@@ -13,19 +13,23 @@ schema:
   - name: SAMPLE
     title: "Unique identifier for sample"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TAXON_NAME
     title: "Scientific name of taxa"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: COPEPOD
     title: "Taxonomic flag value"
     type: string
-    required: true    
+    constraints:
+      required: true    
   - name: TAXON_GROUP
     title: "Functional group assigned to taxa"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: GENUS
     title: "Genus name of taxa"
     type: string
@@ -41,15 +45,18 @@ schema:
   - name: TAXON_COUNT
     title: "Number of the taxa counted"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: SAMPVOL_M3
     title: "Volume of sample analysed (cubic metres)"
     type: number
-    required: true 
+    constraints:
+      required: true 
   - name: ZOOP_ABUNDANCE_M3
     title: "Abundance of the taxa per cubic metre of water"
     type: number
-    required: true
+    constraints:
+      required: true
 
   primaryKey:
   - SAMPLE