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1. SOAPdenovo2 SOAPdenovo2 Public

   Next generation sequencing reads de novo assembler.

   C 220 78

2. Clairvoyante Clairvoyante Public

   Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

   Python 171 27

3. HKU-BAL/Clair HKU-BAL/Clair Public

   Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

   Python 104 12

4. voutcn/megahit voutcn/megahit Public

   Ultra-fast and memory-efficient (meta-)genome assembler

   C++ 596 135

5. HKU-BAL/Clair3 HKU-BAL/Clair3 Public

   Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

   Python 245 26

6. HKU-BAL/ClairS HKU-BAL/ClairS Public

   ClairS - a deep-learning method for long-read somatic small variant calling

   Python 73 7