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Long-read ITS metabarcoding of fungi with Oxford Nanopore Technologies sequencing

This is the page that hosts the work completed as part of my Masters thesis on long-read metabarcoding. You can read the thesis online here: https://aringeri.github.io/long-read-ITS-metabarcoding-thesis/

The pipeline/workflow developed as part of the research project is found here: https://github.com/aringeri/nanoporcini.

Data analysis scripts

The R scripts used to generate figures and statistics for the thesis can be found in reports/masters/thesis/analysis.

Thesis contents

The document was prepared using markdown and Quarto which can be found in reports/masters/thesis.

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My masters thesis on long-read metabarcoding published as a Quarto site, along with code used for data analysis.

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