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the google life sciences api creates a new snakemake container to run each of our jobs
so our dependencies must be installed anew by snakemake every time it runs a job, since each job is run in a new, empty container
this process may add substantially to the runtime of some of our instances and the cost of using them
we have two options:
separate our dependencies into different env files to install only the necessary dependencies for each job
create a custom snakemake container with our dependencies already installed in it and force snakemake to use our container instead of its own
The text was updated successfully, but these errors were encountered:
the google life sciences api creates a new snakemake container to run each of our jobs
so our dependencies must be installed anew by snakemake every time it runs a job, since each job is run in a new, empty container
this process may add substantially to the runtime of some of our instances and the cost of using them
we have two options:
The text was updated successfully, but these errors were encountered: