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Issues list

Specify in docs that vcf file needs accompanying index file
#79 opened Apr 15, 2021 by zrcjessica
1
document meaning of columns in output of R scripts
#78 opened Apr 12, 2021 by aryarm
add config option for supporting reads cutoff enhancement New feature or request
#77 opened Mar 31, 2021 by aryarm
priorities
#75 opened Mar 15, 2021 by aryarm
12 tasks
big picture: turning this into a command line tool enhancement New feature or request
#74 opened Mar 15, 2021 by aryarm
1
create a small, test dataset and a testing suite enhancement New feature or request good first issue Good for newcomers
#73 opened Feb 4, 2021 by aryarm
2
simplify how samples are specified enhancement New feature or request
#72 opened Feb 4, 2021 by aryarm
4
allow BAM files as input to the WASP subworkflow enhancement New feature or request gcp
#71 opened Jan 31, 2021 by aryarm
1
Change name of column for proportion of ref allele in rna.csv.gz
#70 opened Jan 25, 2021 by zrcjessica
add support for peak regions for ASOC analysis
#69 opened Jan 25, 2021 by zrcjessica
1
2
add error messages for dataframes with 0 rows after filtering
#68 opened Jan 21, 2021 by zrcjessica
1
remove quoting in CSVs output by R scripts enhancement New feature or request
#67 opened Jan 21, 2021 by aryarm
support for single-end RNA-seq and ATAC-seq in the WASP subworkflow enhancement New feature or request
#65 opened Jan 18, 2021 by aryarm
11 of 13 tasks
1
allow gzipped FASTAs and GTFs when using STAR enhancement New feature or request
#64 opened Jan 15, 2021 by aryarm
1
extract heterozygotes from the vcf before converting to h5 files enhancement New feature or request
#63 opened Jan 8, 2021 by aryarm
1
ATAC-seq support enhancement New feature or request
#61 opened Oct 2, 2020 by aryarm
1
filter to only GQ tag before extracting GQ tags per sample enhancement New feature or request gcp
#59 opened Sep 19, 2020 by aryarm
set disk_mb values appropriately bug Something isn't working gcp
#58 opened Sep 1, 2020 by aryarm
allow for linking samples from a terra bucket enhancement New feature or request gcp
#57 opened Aug 28, 2020 by aryarm
2
improve dependency installation on cloud enhancement New feature or request gcp
#56 opened Aug 28, 2020 by aryarm
preemptible instances enhancement New feature or request gcp
#55 opened Aug 28, 2020 by aryarm
snps that don't overlap a gene bug Something isn't working
#50 opened May 22, 2019 by aryarm
1
LD_LIBRARY_PATH problems bug Something isn't working
#49 opened Sep 11, 2018 by aryarm
@aryarm
2
r packages enhancement New feature or request
#47 opened Aug 27, 2018 by aryarm
@aryarm
use snakemake validation enhancement New feature or request
#5 opened Jun 4, 2018 by aryarm
@aryarm
1
ProTip! What’s not been updated in a month: updated:<2025-01-22.