allele_freq_map

R script for visualising allele frequency on world map

Usage

create and activate conda mapplot_r and run the script as follows

1. conda env create -f mapplot_r.yml
2. conda activate mapplot_r
3. Rscript script.R ./input_file/test_data.txt ./countries.csv 4 out_file

#countries.csv contains country names, and their latitute and longitute
#4 is number of allele type
#out_file is output file label
#other parameters can be adjusted in script.R

#reference source:https://github.com/mfmakahiya/Map-plot