Merge pull request #321 from Cadair/0.9

Prepare a 0.9.1 release with support for 3.11

.github/workflows/ci_workflows.yml

@@ -22,9 +22,13 @@ jobs:
         - linux: py38-test
         - linux: py39-test
         - linux: py310-test
+        - linux: py311-test-devdeps
         - windows: py38-test-oldestdeps
         - windows: py39-test
         - windows: py310-test
+      libraries: |
+        apt:
+          - libopenblas-dev
       coverage: 'codecov'
 
   publish:
@@ -38,6 +42,6 @@ jobs:
         - cp*-manylinux_aarch64
         - cp*-macosx_x86_64
         - cp*-macosx_arm64
-        - cp*-win*
+        - cp*-win_amd64
     secrets:
       pypi_token: ${{ secrets.pypi_token }}

.pre-commit-config.yaml

@@ -0,0 +1,55 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.3.0
+    hooks:
+      - id: check-added-large-files
+      - id: check-case-conflict
+      - id: check-yaml
+      - id: debug-statements
+      - id: end-of-file-fixer
+        exclude: ".*(data.*|extern.*|licenses.*|.*.fits)$"
+      - id: trailing-whitespace
+        exclude: ".*(data.*|extern.*|licenses.*|.*.fits)$"
+
+  # We list the warnings/errors to check for here rather than in setup.cfg because
+  # we don't want these options to apply whenever anyone calls flake8 from the
+  # command-line or their code editor - in this case all warnings/errors should be
+  # checked for. The warnings/errors we check for here are:
+  # E101 - mix of tabs and spaces
+  # W191 - use of tabs
+  # E201 - whitespace after '('
+  # E202 - whitespace before ')'
+  # W291 - trailing whitespace
+  # W292 - no newline at end of file
+  # W293 - trailing whitespace
+  # W391 - blank line at end of file
+  # E111 - 4 spaces per indentation level
+  # E112 - 4 spaces per indentation level
+  # E113 - 4 spaces per indentation level
+  # E301 - expected 1 blank line, found 0
+  # E302 - expected 2 blank lines, found 0
+  # E303 - too many blank lines (3)
+  # E304 - blank lines found after function decorator
+  # E305 - expected 2 blank lines after class or function definition
+  # E306 - expected 1 blank line before a nested definition
+  # E502 - the backslash is redundant between brackets
+  # E722 - do not use bare except
+  # E901 - SyntaxError or IndentationError
+  # E902 - IOError
+  # E999: SyntaxError -- failed to compile a file into an Abstract Syntax Tree
+  # F822: undefined name in __all__
+  # F823: local variable name referenced before assignment
+  - repo: https://github.com/PyCQA/flake8
+    rev: 5.0.4
+    hooks:
+      - id: flake8
+        args:
+          [
+            "--count",
+            "--select",
+            "E101,W191,E201,E202,W291,W292,W293,W391,E111,E112,E113,E30,E502,E722,E901,E902,E999,F822,F823",
+          ]
+        exclude: ".*(data.*|extern.*|cextern)$"
+
+ci:
+  autofix_prs: false

docs/_templates/autosummary/base.rst

@@ -1,2 +1,2 @@
 {% extends "autosummary_core/base.rst" %}
-{# The template this is inherited from is in astropy/sphinx/ext/templates/autosummary_core. If you want to modify this template, it is strongly recommended that you still inherit from the astropy template. #}
+{# The template this is inherited from is in astropy/sphinx/ext/templates/autosummary_core. If you want to modify this template, it is strongly recommended that you still inherit from the astropy template. #}

docs/_templates/autosummary/class.rst

@@ -1,2 +1,2 @@
 {% extends "autosummary_core/class.rst" %}
-{# The template this is inherited from is in astropy/sphinx/ext/templates/autosummary_core. If you want to modify this template, it is strongly recommended that you still inherit from the astropy template. #}
+{# The template this is inherited from is in astropy/sphinx/ext/templates/autosummary_core. If you want to modify this template, it is strongly recommended that you still inherit from the astropy template. #}

docs/_templates/autosummary/module.rst

@@ -1,2 +1,2 @@
 {% extends "autosummary_core/module.rst" %}
-{# The template this is inherited from is in astropy/sphinx/ext/templates/autosummary_core. If you want to modify this template, it is strongly recommended that you still inherit from the astropy template. #}
+{# The template this is inherited from is in astropy/sphinx/ext/templates/autosummary_core. If you want to modify this template, it is strongly recommended that you still inherit from the astropy template. #}

pyproject.toml

@@ -4,8 +4,9 @@ requires = ["setuptools",
             "wheel",
             "extension-helpers",
             "oldest-supported-numpy",
-            "cython==0.29.21"]
+            "cython==0.29.32"]
 build-backend = 'setuptools.build_meta'
 
 [tool.cibuildwheel]
 skip = "cp36-* pp* *-musllinux* cp310-win32"
+test-skip = "*-macosx_arm64 *-manylinux_aarch64"

setup.cfg

@@ -3,7 +3,7 @@ name = reproject
 author = Thomas Robitaille, Christoph Deil, Adam Ginsburg
 author_email =  thomas.robitaille@gmail.com
 license = BSD 3-Clause
-license_file = LICENSE
+license_files = LICENSE
 url = https://reproject.readthedocs.io
 description = Reproject astronomical images
 long_description = file: README.rst
@@ -60,6 +60,10 @@ filterwarnings =
     ignore:No observer defined on WCS:astropy.utils.exceptions.AstropyUserWarning
     ignore:unclosed file:ResourceWarning
     ignore:The conversion of these 2D helioprojective coordinates to 3D is all NaNs
+    # This is a sunpy < 4.1 issue with Python 3.11
+    ignore:'xdrlib' is deprecated and slated for removal in Python 3.13
+    # This is a pyvo issue with Python 3.11
+    ignore:'cgi' is deprecated and slated for removal in Python 3.13
 
 [coverage:run]
 omit =

tox.ini

@@ -1,12 +1,9 @@
 [tox]
 envlist =
-    py{37,38,39,310}-{test}{-oldestdeps,-numpy121}
+    py{37,38,39,310,311}-{test}{-oldestdeps,-numpy121}
     build_docs
     codestyle
 isolated_build = True
-indexserver =
-    NIGHTLY = https://pypi.anaconda.org/scipy-wheels-nightly/simple
-    ASTROPY = https://pkgs.dev.azure.com/astropy-project/astropy/_packaging/nightly/pypi/simple/
 
 [testenv]
 whitelist_externals =
@@ -16,7 +13,7 @@ passenv =
 setenv =
     HOME = {envtmpdir}
     MPLBACKEND = Agg
-    PYTEST_COMMAND = pytest --arraydiff --arraydiff-default-format=fits --pyargs reproject --cov reproject --cov-config={toxinidir}/setup.cfg {toxinidir}/docs 
+    PYTEST_COMMAND = pytest --arraydiff --arraydiff-default-format=fits --pyargs reproject --cov reproject --cov-config={toxinidir}/setup.cfg {toxinidir}/docs
 changedir =
     .tmp/{envname}
 deps =
@@ -27,9 +24,9 @@ deps =
     oldestdeps: astropy-healpix==0.6
     oldestdeps: scipy==1.3.2
 
-    devdeps: :NIGHTLY:numpy
-    devdeps: :NIGHTLY:scipy
-    devdeps: :ASTROPY:astropy
+    devdeps: numpy>=0.0.dev0
+    devdeps: scipy>=0.0.dev0
+    devdeps: astropy>=0.0.dev0
     devdeps: git+https://github.com/asdf-format/asdf.git#egg=asdf
     devdeps: git+https://github.com/astropy/asdf-astropy.git
     devdeps: git+https://github.com/spacetelescope/gwcs.git#egg=gwcs