Crosshair is a Fiji plugin for targeted ultramicrotomy via 3D image data (e.g. micro-CT data).
If you haven't used Fiji/ImageJ before - you can download it from the ImageJ website.
If you're using an existing Fiji installation, make sure it is up to date!
Go to Help > Update... in the imagej menu, and select Apply Changes.
Go to Help > Update... in the imagej menu, and select Manage update sites.
In the new window that pops up, select Add Unlisted Site. This will create a new row in the table.
Fill this row out so it looks like below:
| Active | Name | URL | Host | Directory on Host | Description |
|---|---|---|---|---|---|
| ✓ | Crosshair |
https://sites.imagej.net/Crosshair/ |
Then click Apply and Close, followed by Apply Changes.
A full user guide is provided in the Crosshair wiki.
If you use Crosshair in your work, please cite our paper on eLife
If you find a problem with Crosshair, please let us know!
Go to the issue tracker and click the green New issue button at the top right. Write a short title and description for your issue, along with information about what type of computer you were using (Windows / mac etc.). Then click the Submit new issue button.
Some brief information about how to release new versions and keep dependencies up to date is also provided in the repository.