Updated links from dev to main

README.md

@@ -1,4 +1,4 @@
-[![UNRAVEL Logo](https://github.com/b-heifets/UNRAVEL/blob/dev/unravel/docs/_static/UNRAVEL_logo.png)](https://b-heifets.github.io/UNRAVEL/)
+[![UNRAVEL Logo](https://github.com/b-heifets/UNRAVEL/blob/main/unravel/docs/_static/UNRAVEL_logo.png)](https://b-heifets.github.io/UNRAVEL/)
 
 ### UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images
 * UNRAVEL is a [Python](https://www.python.org/) package & command line tool for the analysis of brain-wide imaging data, automating: 
@@ -19,7 +19,7 @@
 
 ---
 
-<img src="https://github.com/b-heifets/UNRAVEL/blob/dev/unravel/docs/_static/Heifets_lab_logo.png" alt="Heifets Lab" width="500">
+<img src="https://github.com/b-heifets/UNRAVEL/blob/main/unravel/docs/_static/Heifets_lab_logo.png" alt="Heifets Lab" width="500">
 
 
 
@@ -28,7 +28,7 @@
 * [UNRAVEL visualizer GitHub repo](https://github.com/MetaCell/cfos-visualizer/)
 * Developed by [MetaCell](https://metacell.us/) with support from the [Heifets lab](https://heifetslab.stanford.edu/)
 
-![UNRAVEL visualizer](https://github.com/b-heifets/UNRAVEL/blob/dev/unravel/docs/_static/UNRAVEL_visualizer.png)
+![UNRAVEL visualizer](https://github.com/b-heifets/UNRAVEL/blob/main/unravel/docs/_static/UNRAVEL_visualizer.png)
 
 ### Contact us
 If you have any questions, suggestions, or are interested in collaborations and contributions, please reach out to us. 

unravel/docs/guide.md

@@ -244,7 +244,7 @@ unravel_commands runs ./\<repo_root_dir\>/unravel/unravel_commands.py
 
 Its help guide is here: {py:mod}`unravel.unravel_commands` 
 
-Commands are defined in the `[project.scripts]` section of the [pyproject.toml](https://github.com/b-heifets/UNRAVEL/blob/dev/pyproject.toml) in the root directory of the UNRAVEL repository (repo).
+Commands are defined in the `[project.scripts]` section of the [pyproject.toml](https://github.com/b-heifets/UNRAVEL/blob/main/pyproject.toml) in the root directory of the UNRAVEL repository (repo).
 
 If new commands are added to run new scripts (a.k.a. modules), reinstall the unravel package with pip.