Added links to the heifetslab-unravel PyPI page and installation comm…

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b-heifets · Jun 26, 2024 · b3d6612 · b3d6612
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diff --git a/unravel/docs/_build/doctrees/environment.pickle b/unravel/docs/_build/doctrees/environment.pickle
diff --git a/unravel/docs/_build/doctrees/index.doctree b/unravel/docs/_build/doctrees/index.doctree
diff --git a/unravel/docs/_build/html/_sources/index.rst.txt b/unravel/docs/_build/html/_sources/index.rst.txt
@@ -49,9 +49,7 @@ UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet
     * Voxel-wise analysis of fluorescent signals and cluster correction
     * Validation of hot/cold spots via cell/label density quantification at cellular resolution
 * `UNRAVEL GitHub repository <https://github.com/b-heifets/UNRAVEL/tree/main>`_
-* `UNRAVEL can be installed via the Python Package Index (PyPI) <https://pypi.org/project/heifetslab-unravel/>`_ with this command:
-  .. code-block:: bash
-      pip install heifetslab-unravel
+* `UNRAVEL can be installed via PyPI <https://pypi.org/project/heifetslab-unravel/>`_: ``pip install heifetslab-unravel``
 * `Initial UNRAVEL publication <https://www.nature.com/articles/s41386-023-01613-4>`_
 * UNRAVEL was developed by `the Heifets lab <https://heifetslab.stanford.edu/>`_ and `TensorAnalytics <https://sites.google.com/view/tensoranalytics/home?authuser=0>`_
 * Additional support/guidance was provided by:

diff --git a/unravel/docs/_build/html/index.html b/unravel/docs/_build/html/index.html
@@ -351,9 +351,9 @@
     </div>
 </div><br><section id="un-biased-high-resolution-analysis-and-validation-of-ensembles-using-light-sheet-images">
 <h1>UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images<a class="headerlink" href="#un-biased-high-resolution-analysis-and-validation-of-ensembles-using-light-sheet-images" title="Link to this heading">#</a></h1>
-<ul>
+<ul class="simple">
 <li><dl class="simple">
-<dt>UNRAVEL is a <a class="reference external" href="https://www.python.org/">Python</a> package &amp; command line tool for the analysis of brain-wide imaging data, automating:</dt><dd><ul class="simple">
+<dt>UNRAVEL is a <a class="reference external" href="https://www.python.org/">Python</a> package &amp; command line tool for the analysis of brain-wide imaging data, automating:</dt><dd><ul>
 <li><p>Registration of brain-wide images to a common atlas space</p></li>
 <li><p>Quantification of cell/label densities across the brain</p></li>
 <li><p>Voxel-wise analysis of fluorescent signals and cluster correction</p></li>
@@ -363,16 +363,11 @@ <h1>UN-biased high-Resolution Analysis and Validation of Ensembles using Light s
 </dl>
 </li>
 <li><p><a class="reference external" href="https://github.com/b-heifets/UNRAVEL/tree/main">UNRAVEL GitHub repository</a></p></li>
-<li><p><a class="reference external" href="https://pypi.org/project/heifetslab-unravel/">UNRAVEL can be installed via the Python Package Index (PyPI)</a> with this command:
-.. code-block:: bash</p>
-<blockquote>
-<div><p>pip install heifetslab-unravel</p>
-</div></blockquote>
-</li>
+<li><p><a class="reference external" href="https://pypi.org/project/heifetslab-unravel/">UNRAVEL can be installed via PyPI</a>: <code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">heifetslab-unravel</span></code></p></li>
 <li><p><a class="reference external" href="https://www.nature.com/articles/s41386-023-01613-4">Initial UNRAVEL publication</a></p></li>
 <li><p>UNRAVEL was developed by <a class="reference external" href="https://heifetslab.stanford.edu/">the Heifets lab</a> and <a class="reference external" href="https://sites.google.com/view/tensoranalytics/home?authuser=0">TensorAnalytics</a></p></li>
 <li><dl class="simple">
-<dt>Additional support/guidance was provided by:</dt><dd><ul class="simple">
+<dt>Additional support/guidance was provided by:</dt><dd><ul>
 <li><p><a class="reference external" href="https://med.stanford.edu/neurosurgery/research/shamloo.html">The Shamloo lab</a></p></li>
 <li><p><a class="reference external" href="https://profiles.stanford.edu/robert-malenka">The Malenka lab</a></p></li>
 <li><p><a class="reference external" href="https://med.stanford.edu/nidap50.html">The Stanford-based P50 center funded by NIDA</a></p></li>

diff --git a/unravel/docs/_build/html/searchindex.js b/unravel/docs/_build/html/searchindex.js
diff --git a/unravel/docs/index.rst b/unravel/docs/index.rst
@@ -49,9 +49,7 @@ UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet
     * Voxel-wise analysis of fluorescent signals and cluster correction
     * Validation of hot/cold spots via cell/label density quantification at cellular resolution
 * `UNRAVEL GitHub repository <https://github.com/b-heifets/UNRAVEL/tree/main>`_
-* `UNRAVEL can be installed via the Python Package Index (PyPI) <https://pypi.org/project/heifetslab-unravel/>`_ with this command:
-  .. code-block:: bash
-      pip install heifetslab-unravel
+* `UNRAVEL can be installed via PyPI <https://pypi.org/project/heifetslab-unravel/>`_: ``pip install heifetslab-unravel``
 * `Initial UNRAVEL publication <https://www.nature.com/articles/s41386-023-01613-4>`_
 * UNRAVEL was developed by `the Heifets lab <https://heifetslab.stanford.edu/>`_ and `TensorAnalytics <https://sites.google.com/view/tensoranalytics/home?authuser=0>`_
 * Additional support/guidance was provided by: