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24 Open 197 Closed
24 Open 197 Closed
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Issues list

Add --qc-keep to poppunk_assign enhancement New feature or request
#335 opened Oct 23, 2024 by DOH-JDJ0303
1
.dist.npy needed by poppunk --qc-db
#334 opened Oct 23, 2024 by DOH-JDJ0303
1
Taxon not beeing assigned correctly
#333 opened Oct 17, 2024 by nermze
6
Improve network functions
#331 opened Oct 9, 2024 by nickjcroucher
3 tasks
@nickjcroucher
Remove longtosquare from visualise
#329 opened Sep 27, 2024 by johnlees
Error when updating PopPUNK database without reference data
#325 opened Sep 11, 2024 by HarryHung
4
poppunk iterate: raise TypeError("multiplier must be an int or float")
#323 opened Aug 22, 2024 by luciagrami
1
Input reference list is misformatted
#310 opened Apr 30, 2024 by SeqBioUCC
10
Cytoscape includes strains from the entire database even with the --include-files option
#309 opened Apr 25, 2024 by sydelstan
5
Issue with a large Pseudomonas dataset
#299 opened Jan 16, 2024 by RyanCFink
4
Zero Accessory Distances and Varied Core Distances in PopPUNK Fit Graph Analysis question Further information is requested
#289 opened Nov 24, 2023 by RyanCFink
8
Enhancement: Assigning multiple GPSC types to mixed (meta-genome) samples enhancement New feature or request wontfix This will not be worked on
#287 opened Nov 13, 2023 by sreerampeela
2
Sketchlib back end not available? package Packaging of code
#278 opened Jul 21, 2023 by hayleyjaywilson
8
ImportError: dlopen: cannot load any more object with static TLS package Packaging of code
#277 opened Jul 19, 2023 by davidtong28
5
Add tutorial to documentation package Packaging of code
#275 opened Jul 17, 2023 by johnlees
@johnlees
Check for special characters in sample names enhancement New feature or request
#262 opened Apr 14, 2023 by johnlees
@johnlees
Investigate slow assignment with full DBs vs ref DBs bug Something isn't working
#250 opened Dec 7, 2022 by johnlees
@johnlees
Replace network code with pp-netlib code Changes to the coding implementation package Packaging of code
#249 opened Dec 7, 2022 by johnlees
@johnlees
Cytoscape visualisation with queries not showing all edges
#222 opened Sep 20, 2022 by johnlees
Help with issues running poppunk in HPC environment package Packaging of code
#193 opened Nov 10, 2021 by CarmenSheppard
8
Remove dbFuncs dictionary code Changes to the coding implementation
#166 opened Apr 16, 2021 by johnlees
@johnlees
Improve distance estimation enhancement New feature or request
#130 opened Nov 20, 2020 by nickjcroucher
@nickjcroucher
2
Meta: Refactor code base
#103 opened Sep 30, 2020 by johnlees
8 of 11 tasks
@johnlees @nickjcroucher
2
Add interactivity to distance plot enhancement New feature or request plots Plotting issues
#86 opened May 20, 2020 by johnlees
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