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@bahlolab

The Walter and Eliza Hall Institute of Medical Research

Bahlo laboratory statistical genetics software development

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  1. bioinfotools bioinfotools Public

    Documenting usage and experience with bioinformatic tools

    41 12

  2. exSTRa exSTRa Public

    Expanded STR algorithm for Illumina sequencing data

    R 23 8

  3. superSTR superSTR Public

    A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.

    C 18 7

  4. Genes4Epilepsy Genes4Epilepsy Public

    A curated list of monogenic epilepsy genes

    HTML 13 1

  5. pf_variant_calling_pipeline pf_variant_calling_pipeline Public

    A bpipe pipeline for processing WGS from Plasmodium facliparum

    Groovy 7 1

  6. isoRelate isoRelate Public

    Performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data

    R 6 2

Repositories

Showing 10 of 56 repositories
  • MitoHPC Public Forked from dpuiu/MitoHPC
    bahlolab/MitoHPC’s past year of commit activity
    Shell 0 MIT 13 0 0 Updated Feb 24, 2025
  • FoundHaplo Public

    An R package to detect individuals with disease-causing variants by performing likelihood of Identity by descent between pairs of individuals from SNP genotyping array data

    bahlolab/FoundHaplo’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Feb 22, 2025
  • GeneSetPheno Public

    GeneSetPheno is a user-friendly graphical interface application designed to integrate, summarize, and visualize gene and variant-phenotype associations across gene sets.

    bahlolab/GeneSetPheno’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 22, 2025
  • TBtypeR Public

    Mycobacterium tuberculosis mixture detection and strain typing from WGS data

    bahlolab/TBtypeR’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 30, 2025
  • mitoCN Public

    Estimate mitochondrial DNA copy number from whole genome sequencing data

    bahlolab/mitoCN’s past year of commit activity
    R 3 MIT 2 0 0 Updated Dec 18, 2024
  • retinalThicknessGWAS Public

    Retinal Thickness phenotype cleaning and GWAS workflow

    bahlolab/retinalThicknessGWAS’s past year of commit activity
    R 2 0 0 0 Updated Nov 22, 2024
  • mixSTR Public

    Searching for read pairs containing mixed-motif STR expansions from complex repeat structures

    bahlolab/mixSTR’s past year of commit activity
    Python 0 0 0 0 Updated Nov 5, 2024
  • nf-cavalier Public

    Nextflow Pipeline for singleton and family based candidate variant prioritisation based on gene lists using the Cavalier R package. This pipeline is a work in progress.

    bahlolab/nf-cavalier’s past year of commit activity
    Nextflow 0 3 4 0 Updated Oct 15, 2024
  • cavalier Public

    cavalier: Candidate Variant List Evaluation Report

    bahlolab/cavalier’s past year of commit activity
    R 4 1 0 0 Updated Oct 15, 2024
  • GEFS-PRS-manuscript Public

    Code for statistical analyses and plots relevant to manuscript

    bahlolab/GEFS-PRS-manuscript’s past year of commit activity
    R 0 0 0 0 Updated Sep 20, 2024
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