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@bailey-lab

Bailey Lab

Studying the genetics and genomics of infectious disease and immunity

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  1. MIPTools MIPTools Public

    A suite of computational tools used for molecular inversion probe design, data processing, and analysis.

    Jupyter Notebook 6 9

  2. miplicorn miplicorn Public

    A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.

    R 3 2

  3. SeekDeep SeekDeep Public

    Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

    C++ 13 5

  4. MIPWrangler MIPWrangler Public

    Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results

    C++ 1 1

  5. coiaf coiaf Public

    Complexity of Infection Estimation with Allele Frequencies

    R 3 2

  6. coiaf-real-data coiaf-real-data Public

    MalariaGEN Plasmodium falciparum Community Project analysis using coiaf

    HTML 6 1

Repositories

Showing 10 of 46 repositories
  • MIPWrangler Public

    Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results

    bailey-lab/MIPWrangler’s past year of commit activity
    C++ 1 GPL-3.0 1 0 0 Updated Nov 12, 2024
  • SeekDeep Public

    Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

    bailey-lab/SeekDeep’s past year of commit activity
    C++ 13 LGPL-3.0 5 7 0 Updated Nov 12, 2024
  • miplicorn Public

    A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.

    bailey-lab/miplicorn’s past year of commit activity
    R 3 2 5 2 Updated Nov 4, 2024
  • bailey-lab/Po_popgen_snakemake’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2024
  • MIPTools Public

    A suite of computational tools used for molecular inversion probe design, data processing, and analysis.

    bailey-lab/MIPTools’s past year of commit activity
    Jupyter Notebook 6 MIT 9 12 3 Updated Oct 17, 2024
  • pfsmarrt_cameroon_7-6-24 Public

    these are scripts used to analyze pfsmarrt amplicon performance on control datasets and 100 samples from dschang_cameroon

    bailey-lab/pfsmarrt_cameroon_7-6-24’s past year of commit activity
    Python 0 0 0 0 Updated Oct 2, 2024
  • merge_probe_sets Public

    merges probe sets of several project resources to create a new project_resources directory

    bailey-lab/merge_probe_sets’s past year of commit activity
    Python 0 0 1 0 Updated Sep 28, 2024
  • bailey-lab/MSMT_2021_DR_analyses’s past year of commit activity
    Python 0 0 0 0 Updated Sep 24, 2024
  • seekdeep_analysis_snakemake Public

    Analyzes seekdeep data for read counts of individual samples

    bailey-lab/seekdeep_analysis_snakemake’s past year of commit activity
    Python 1 0 0 0 Updated Sep 7, 2024
  • seekdeep_nanopore_snakemake Public

    a basic workflow for running seekdeep on nanopore

    bailey-lab/seekdeep_nanopore_snakemake’s past year of commit activity
    Python 1 0 1 0 Updated Aug 5, 2024

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