Pinned Loading

1. vsearchpipeline vsearchpipeline Public

   VSEARCH pipeline for ASV inference of 16S seq data

   Nextflow 1

2. metagenomicspipeline metagenomicspipeline Public

   shotgun metagenomics pipeline to obtain relative abundances and pathway abundances

   Nextflow 1

3. saltprofiler saltprofiler Public

   Nextflow

4. reportgenerator reportgenerator Public

   Generator of patient microbiome reports

   R

5. strainflow strainflow Public

   StrainPhlAn pipeline for strainsharing

   Nextflow 1

6. annotationpipeline annotationpipeline Public

   Annotation of bacterial genomes using Bakta, EggNOG mapper, Cayman and VFDB

   Nextflow