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Update params_qc_nf-core.R
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abartlett004 authored Jun 17, 2024
1 parent 6b0c63f commit 67bfdef
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Expand Up @@ -6,6 +6,6 @@ metadata_fn='/Path/to/metadata/meta.csv'
# This file is inside star_salmon/ folder
se_object='/path/to/nf-core/output/star_salmon/salmon.merged.gene_counts.rds'
# This folder called "multiqc_report_data" is inside the output directory star_salmon inside multiqc folder
multiqc_data_dir='/path/to/nf-core/output/star_salmon/multiqc_report_data'
multiqc_data_dir='/path/to/nf-core/output/multiqc/star_salmon/multiqc_report_data'
# This file is inside the genome folder in the output directory, use this only for non-model organism
# gtf_fn='/path/to/nf-core/output/genome/hg38.filtered.gtf'

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