SIMSBIOHUB-619: Import Observations With Sampling Information

[mauberti-bc]

Links to Jira Tickets

• https://apps.nrs.gov.bc.ca/int/jira/browse/SIMSBIOHUB-619

Description of Changes

• Allow observations to be imported from a .csv with sampling site, sampling method, and sampling period
• Sampling information is optional
• Replaces the observation latitude/longitude NOT NULL constraints with a check for either latitude/longitude or survey_sample_period_id being NOT NULL
• Replaces the observation date/time NOT NULL constraints with a check for either date or survey_sample_period_id being NOT NULL
• If sign is not specified, sign defaults to "direct sighting"

Testing Notes

• Sampling information is optional in the csv
• If a site but no method is specified, and only one method exists for that site, SIMS will use the only method
• If a method but no period is specified, and only one period exists for that method, SIMS will use the only period
• If a method but no period is specified and multiple periods exists, SIMS will try to find the period based on the observation date/time.
• There is no validation that the observation date/time lies within the period's start and end

NOTE: Dates are assumed to be in UTC format when read in with xlsx.read(), causing observation dates to be incorrectly offset by 1 day earlier. This will be fixed in a separate PR.

[github-actions]

Openshift URLs for the PR Deployment:

• App Route: https://biohubbc-app-1389-af2668-dev.apps.silver.devops.gov.bc.ca/
• Api Route: https://biohubbc-api-1389-af2668-dev.apps.silver.devops.gov.bc.ca/
• Pods: https://console.apps.silver.devops.gov.bc.ca/k8s/ns/af2668-dev/pods?name=1389

[codecov]

Codecov Report

Attention: Patch coverage is 32.38095% with 71 lines in your changes missing coverage. Please review.

Project coverage is 46.27%. Comparing base (bb7855b) to head (1777265).
Report is 1 commits behind head on dev.

Files with missing lines	Patch %	Lines
api/src/services/observation-service.ts	6.25%	60 Missing ⚠️
api/src/utils/xlsx-utils/cell-utils.ts	70.00%	3 Missing and 3 partials ⚠️
...s/observation-repository/observation-repository.ts	0.00%	0 Missing and 4 partials ⚠️
api/src/utils/media/xlsx/xlsx-utils.ts	66.66%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##              dev    #1389      +/-   ##
==========================================
- Coverage   46.34%   46.27%   -0.07%     
==========================================
  Files         782      783       +1     
  Lines       21116    21193      +77     
  Branches     3166     3188      +22     
==========================================
+ Hits         9787     9808      +21     
- Misses      10745    10798      +53     
- Partials      584      587       +3     

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[github-actions]

Openshift URLs for the PR Deployment:

• App Route: https://biohubbc-app-1389-af2668-dev.apps.silver.devops.gov.bc.ca/
• Api Route: https://biohubbc-api-1389-af2668-dev.apps.silver.devops.gov.bc.ca/
• Pods: https://console.apps.silver.devops.gov.bc.ca/k8s/ns/af2668-dev/pods?name=1389

[NickPhura]

🐧

[sonarcloud]

Quality Gate passed

Issues
4 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
2.0% Duplication on New Code

See analysis details on SonarCloud