Snow pack Historical Norms Comparison Analysis - Auto Fill Data #532
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name: Snow pack Historical Norms Comparison Analysis - Auto Fill Data | |
on: | |
# push action for debugging purposes, comment up when working | |
# push: | |
# branches: ["feat/44-containerize-run"] | |
# 2pm utc = 6am pst.. gha uses utc for timezone so action needs to be | |
# described as utc time. | |
schedule: | |
- cron: '0 14 * * *' | |
workflow_dispatch: | |
jobs: | |
populate-matrix: | |
defaults: | |
run: | |
shell: bash | |
runs-on: ubuntu-20.04 | |
continue-on-error: true | |
environment: PROD | |
env: | |
OBJ_STORE_BUCKET: ${{ secrets.OBJ_STORE_BUCKET }} | |
OBJ_STORE_SECRET: ${{ secrets.OBJ_STORE_SECRET }} | |
OBJ_STORE_USER: ${{ secrets.OBJ_STORE_USER }} | |
OBJ_STORE_HOST: ${{ secrets.OBJ_STORE_HOST }} | |
SNOWPACK_DATA: ./data | |
EARTHDATA_USER: ${{ secrets.EARTHDATA_USER }} | |
EARTHDATA_PASS: ${{ secrets.EARTHDATA_PASS }} | |
SNOWPACK_ENVS_PTH: ./env.yaml | |
outputs: | |
matrix: ${{ steps.identify-dates-to-run.outputs.matrix }} | |
steps: | |
- uses: actions/checkout@v3 | |
id: checkout | |
with: | |
fetch-depth: 0 | |
# # this action is now deprecated... | |
# - name: Install micromamba (conda) environment from explicit.lock | |
# uses: mamba-org/provision-with-micromamba@main | |
# with: | |
# cache-env: false | |
# environment-file: explicit.lock | |
# environment-name: snowpack_env | |
- name: Install micromamba (conda) environment from explicit.lock | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
# micromamba-version: '1.3.1' | |
environment-name: snowpack_env | |
environment-file: 'explicit.lock' | |
init-shell: bash | |
#log-level: debug | |
- name: Install Dependencies (pip) | |
id: install_deps_pip | |
shell: micromamba-shell {0} | |
#shell: bash | |
run: | | |
eval "$($MAMBA_EXE shell hook --shell=bash)" | |
# micromamba activate snowpack_env | |
$MAMBA_EXE activate snowpack_env | |
pip install -r requirements.txt | |
- name: Identify Dates To Run | |
id: identify-dates-to-run | |
shell: micromamba-shell {0} | |
# shell: bash | |
run: | | |
eval "$($MAMBA_EXE shell hook --shell=bash)" | |
# micromamba activate snowpack_env | |
$MAMBA_EXE activate snowpack_env | |
# ---------- populate the secret file ---------- | |
echo EARTHDATA_USER: $EARTHDATA_USER > $SNOWPACK_ENVS_PTH | |
echo EARTHDATA_PASS: $EARTHDATA_PASS >> $SNOWPACK_ENVS_PTH | |
# ---------- get dates to run ---------- | |
days_json=$(python get_available_data.py | jq -r 'tostring') | |
#days_json=$(cat test_data.json | jq -r 'tostring') | |
echo json is $days_json | |
#echo "::set-output name=matrix::$days_json" | |
echo "matrix=$days_json" >> $GITHUB_OUTPUT | |
execute_matrix: | |
environment: PROD | |
env: | |
OBJ_STORE_BUCKET: ${{ secrets.OBJ_STORE_BUCKET }} | |
OBJ_STORE_SECRET: ${{ secrets.OBJ_STORE_SECRET }} | |
OBJ_STORE_USER: ${{ secrets.OBJ_STORE_USER }} | |
OBJ_STORE_HOST: ${{ secrets.OBJ_STORE_HOST }} | |
SNOWPACK_DATA: ./data | |
EARTHDATA_USER: ${{ secrets.EARTHDATA_USER }} | |
EARTHDATA_PASS: ${{ secrets.EARTHDATA_PASS }} | |
SNOWPACK_ENVS_PTH: ./env.yaml | |
needs: [ populate-matrix ] | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: ${{ fromJson(needs.populate-matrix.outputs.matrix) }} | |
max-parallel: 13 | |
# matrix: | |
# date: [ "2021.01.01", "2021.01.02" ] | |
# sat: [ "modis"] | |
steps: | |
- name: Pull GHCR image | |
run: docker pull ghcr.io/${{ github.repository_owner }}/snow_analysis:latest | |
- name: setup data directory | |
id: setup_data_dir | |
run: | | |
mkdir -p $GITHUB_WORKSPACE/data | |
chmod 777 $GITHUB_WORKSPACE/data | |
- name: Build Core Data Directories | |
id: build_core_dirs | |
shell: bash | |
run: | | |
docker run -v $GITHUB_WORKSPACE/data:/data \ | |
-e "OBJ_STORE_BUCKET=${{ secrets.OBJ_STORE_BUCKET }}" \ | |
-e "OBJ_STORE_SECRET=${{ secrets.OBJ_STORE_SECRET }}" \ | |
-e "OBJ_STORE_USER=${{ secrets.OBJ_STORE_USER }}" \ | |
-e "OBJ_STORE_HOST=${{ secrets.OBJ_STORE_HOST }}" \ | |
-e "EARTHDATA_USER=${{ secrets.EARTHDATA_USER }}" \ | |
-e "EARTHDATA_PASS=${{ secrets.EARTHDATA_PASS }}" \ | |
-e "NORM_ROOT=/data" \ | |
-e "SNOWPACK_DATA=/data" \ | |
ghcr.io/${{ github.repository_owner }}/snow_analysis:latest \ | |
python run.py build | |
- name: Download Data | |
id: download_data | |
shell: bash | |
run: | | |
docker run --rm -v $GITHUB_WORKSPACE/data:/data \ | |
-e "OBJ_STORE_BUCKET=${{ secrets.OBJ_STORE_BUCKET }}" \ | |
-e "OBJ_STORE_SECRET=${{ secrets.OBJ_STORE_SECRET }}" \ | |
-e "OBJ_STORE_USER=${{ secrets.OBJ_STORE_USER }}" \ | |
-e "OBJ_STORE_HOST=${{ secrets.OBJ_STORE_HOST }}" \ | |
-e "EARTHDATA_USER=${{ secrets.EARTHDATA_USER }}" \ | |
-e "EARTHDATA_PASS=${{ secrets.EARTHDATA_PASS }}" \ | |
-e "NORM_ROOT=/data" \ | |
-e "SNOWPACK_DATA=/data" \ | |
ghcr.io/${{ github.repository_owner }}/snow_analysis:latest \ | |
python run.py download --date ${{ matrix.date }} --sat ${{ matrix.sat }} | |
- name: Process Data | |
id: process_data | |
shell: bash | |
run: | | |
docker run --rm -v $GITHUB_WORKSPACE/data:/data \ | |
-e "OBJ_STORE_BUCKET=${{ secrets.OBJ_STORE_BUCKET }}" \ | |
-e "OBJ_STORE_SECRET=${{ secrets.OBJ_STORE_SECRET }}" \ | |
-e "OBJ_STORE_USER=${{ secrets.OBJ_STORE_USER }}" \ | |
-e "OBJ_STORE_HOST=${{ secrets.OBJ_STORE_HOST }}" \ | |
-e "EARTHDATA_USER=${{ secrets.EARTHDATA_USER }}" \ | |
-e "EARTHDATA_PASS=${{ secrets.EARTHDATA_PASS }}" \ | |
-e "NORM_ROOT=/data" \ | |
-e "SNOWPACK_DATA=/data" \ | |
ghcr.io/${{ github.repository_owner }}/snow_analysis:latest \ | |
python run.py process --date ${{ matrix.date }} --sat ${{ matrix.sat }} | |
- name: Generate Plots | |
id: generate_plots | |
shell: bash | |
run: | | |
docker run --rm -v $GITHUB_WORKSPACE/data:/data \ | |
-e "OBJ_STORE_BUCKET=${{ secrets.OBJ_STORE_BUCKET }}" \ | |
-e "OBJ_STORE_SECRET=${{ secrets.OBJ_STORE_SECRET }}" \ | |
-e "OBJ_STORE_USER=${{ secrets.OBJ_STORE_USER }}" \ | |
-e "OBJ_STORE_HOST=${{ secrets.OBJ_STORE_HOST }}" \ | |
-e "EARTHDATA_USER=${{ secrets.EARTHDATA_USER }}" \ | |
-e "EARTHDATA_PASS=${{ secrets.EARTHDATA_PASS }}" \ | |
-e "NORM_ROOT=/data" \ | |
-e "SNOWPACK_DATA=/data" \ | |
ghcr.io/${{ github.repository_owner }}/snow_analysis:latest \ | |
python run.py plot --date ${{ matrix.date }} --sat ${{ matrix.sat }} | |
- name: Archive Data | |
id: archive_data | |
shell: bash | |
run: | | |
docker run --rm -v $GITHUB_WORKSPACE/data:/data \ | |
-e "OBJ_STORE_BUCKET=${{ secrets.OBJ_STORE_BUCKET }}" \ | |
-e "OBJ_STORE_SECRET=${{ secrets.OBJ_STORE_SECRET }}" \ | |
-e "OBJ_STORE_USER=${{ secrets.OBJ_STORE_USER }}" \ | |
-e "OBJ_STORE_HOST=${{ secrets.OBJ_STORE_HOST }}" \ | |
-e "ROOTDIRECTORIES_OMIT=/data/kml,/data/norm" \ | |
-e "SRC_ROOT_DIR=/data" \ | |
ghcr.io/${{ github.repository_owner }}/snow_analysis:latest \ | |
python snowpack_archive/runS3Backup.py --days_back 120 | |